Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:64465840-64807616

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmtb11 5 21895825 to 64649236 42753411 QTL hemostasis and thrombosis 11
Hpi2 5 37424144 to 64649236 27225092 QTL hepatic PMN infiltration 2
1700027F09Rik 5 64454813 to 64467942 13129 - lincRNA gene RIKEN cDNA 1700027F09 gene
Tssr51060 5 64467918 to 64467923 5 - TSS region transcription start site region 51060
Tssr51061 5 64467936 to 64467947 11 - TSS region transcription start site region 51061
Tssr51062 5 64467950 to 64467955 5 - TSS region transcription start site region 51062
4930526M16Rik 5 64468057 to 64469010 953 + unclassified gene RIKEN cDNA 4930526M16 gene
C030018K13Rik 5 64477008 to 64483967 6959 + lincRNA gene RIKEN cDNA C030018K13 gene
Tssr46401 5 64487852 to 64487873 21 + TSS region transcription start site region 46401
Tssr46402 5 64505510 to 64505518 8 + TSS region transcription start site region 46402
Tssr46403 5 64515942 to 64515943 1 + TSS region transcription start site region 46403
Gm31423 5 64531928 to 64537825 5897 + lncRNA gene predicted gene, 31423
Gm43836 5 64558183 to 64558563 380 + unclassified gene predicted gene 43836
Gm43835 5 64563771 to 64563919 148 + unclassified gene predicted gene 43835
Gm42566 5 64564177 to 64564819 642 - unclassified gene predicted gene 42566
Tssr46404 5 64576174 to 64576178 4 + TSS region transcription start site region 46404
Gm3716 5 64593863 to 64610699 16836 - lincRNA gene predicted gene 3716
Tssr51063 5 64603139 to 64603186 47 - TSS region transcription start site region 51063
Tssr51064 5 64610691 to 64610709 18 - TSS region transcription start site region 51064
Tssr46405 5 64626852 to 64626860 8 + TSS region transcription start site region 46405
Gm42564 5 64635361 to 64637388 2027 - lincRNA gene predicted gene 42564
Gm42565 5 64635840 to 64637616 1776 + lincRNA gene predicted gene 42565
Gm25306 5 64647633 to 64647749 116 - miRNA gene predicted gene, 25306
D5Mit197 5 64649088 to 64649236 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 197
Tssr51065 5 64680327 to 64680342 15 - TSS region transcription start site region 51065
Tssr51066 5 64680345 to 64680356 11 - TSS region transcription start site region 51066
Gm26761 5 64695461 to 64698521 3060 - lincRNA gene predicted gene, 26761
Gm20033 5 64708210 to 64741937 33727 - lncRNA gene predicted gene, 20033
Tssr46406 5 64781003 to 64781032 29 + TSS region transcription start site region 46406
Tssr46407 5 64797945 to 64797948 3 + TSS region transcription start site region 46407
Gm38457 5 64802365 to 64804975 2610 - protein coding gene predicted gene, 38457
Cpgi15888 5 64802536 to 64804507 1971 CpG island CpG island 15888
Tssr46408 5 64803363 to 64803374 11 + TSS region transcription start site region 46408
Tssr46409 5 64803470 to 64803477 7 + TSS region transcription start site region 46409
Tssr46410 5 64803481 to 64803499 18 + TSS region transcription start site region 46410
Tssr46411 5 64803513 to 64803530 17 + TSS region transcription start site region 46411
Klf3 5 64803523 to 64832903 29380 + protein coding gene Kruppel-like factor 3 (basic)
Tssr46412 5 64803550 to 64803561 11 + TSS region transcription start site region 46412
Tssr46413 5 64803571 to 64803580 9 + TSS region transcription start site region 46413
Tssr46414 5 64803588 to 64803607 19 + TSS region transcription start site region 46414
Tssr46415 5 64803614 to 64803627 13 + TSS region transcription start site region 46415
C230096K16Rik 5 64804014 to 64805735 1721 + protein coding gene RIKEN cDNA C230096K16 gene
Tssr51067 5 64804118 to 64804149 31 - TSS region transcription start site region 51067
Tssr51068 5 64805321 to 64805328 7 - TSS region transcription start site region 51068
Tssr51069 5 64806263 to 64806278 15 - TSS region transcription start site region 51069
Tssr46416 5 64806361 to 64806364 3 + TSS region transcription start site region 46416