Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:63987633-65307749

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmtb11 5 21895825 to 64649236 42753411 QTL hemostasis and thrombosis 11
Hpi2 5 37424144 to 64649236 27225092 QTL hepatic PMN infiltration 2
Lfnq1 5 54253768 to 64422305 10168537 QTL lung function QTL 1
Gm43840 5 63990388 to 63990871 483 - pseudogene predicted gene 43840
Gm25608 5 64002353 to 64002484 131 - snoRNA gene predicted gene, 25608
5830416I19Rik 5 64044978 to 64050228 5250 + lincRNA gene RIKEN cDNA 5830416I19 gene
Cpgi15884 5 64092711 to 64093502 791 CpG island CpG island 15884
Tssr46372 5 64092925 to 64092984 59 + TSS region transcription start site region 46372
Pgm2 5 64092950 to 64128351 35401 + protein coding gene phosphoglucomutase 2
Tssr46373 5 64092989 to 64093007 18 + TSS region transcription start site region 46373
Tssr51057 5 64093537 to 64093547 10 - TSS region transcription start site region 51057
D5Mit303 5 64096828 to 64096943 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 303
D5Mit303.1 5 64096905 to 64097027 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 303.1
Gm23967 5 64101430 to 64101507 77 - miRNA gene predicted gene, 23967
Tssr46374 5 64102887 to 64102903 16 + TSS region transcription start site region 46374
Tssr46375 5 64103709 to 64103754 45 + TSS region transcription start site region 46375
Gm22395 5 64107407 to 64107502 95 - miRNA gene predicted gene, 22395
Gm22559 5 64144248 to 64144381 133 + snoRNA gene predicted gene, 22559
Tbc1d1 5 64156310 to 64351486 195176 + protein coding gene TBC1 domain family, member 1
Tssr46376 5 64156515 to 64156533 18 + TSS region transcription start site region 46376
Tssr46377 5 64156535 to 64156553 18 + TSS region transcription start site region 46377
Cpgi15885 5 64159194 to 64160988 1794 CpG island CpG island 15885
Tssr46378 5 64159429 to 64159443 14 + TSS region transcription start site region 46378
Tssr46379 5 64160049 to 64160060 11 + TSS region transcription start site region 46379
Tssr46380 5 64160207 to 64160220 13 + TSS region transcription start site region 46380
Tssr46381 5 64160227 to 64160270 43 + TSS region transcription start site region 46381
Tssr46382 5 64160271 to 64160296 25 + TSS region transcription start site region 46382
Cpgi15886 5 64173461 to 64173711 250 CpG island CpG island 15886
Gm15824 5 64190033 to 64190987 954 - pseudogene predicted gene 15824
Tssr46383 5 64220909 to 64220916 7 + TSS region transcription start site region 46383
Cpgi15887 5 64229825 to 64231044 1219 CpG island CpG island 15887
Tssr46384 5 64230285 to 64230312 27 + TSS region transcription start site region 46384
Tssr46385 5 64230325 to 64230346 21 + TSS region transcription start site region 46385
Tssr46386 5 64230354 to 64230376 22 + TSS region transcription start site region 46386
Tssr46387 5 64230377 to 64230388 11 + TSS region transcription start site region 46387
Tssr46388 5 64230396 to 64230452 56 + TSS region transcription start site region 46388
Tssr46389 5 64230468 to 64230479 11 + TSS region transcription start site region 46389
Tssr46390 5 64230617 to 64230619 2 + TSS region transcription start site region 46390
Gm43721 5 64233930 to 64236242 2312 + unclassified gene predicted gene 43721
Tssr46391 5 64237959 to 64237964 5 + TSS region transcription start site region 46391
Gm46913 5 64247306 to 64248935 1629 + protein coding gene predicted gene, 46913
Gm15823 5 64252556 to 64253225 669 - pseudogene predicted gene 15823
Tssr51058 5 64255137 to 64255157 20 - TSS region transcription start site region 51058
Gm38634 5 64257163 to 64259476 2313 + lncRNA gene predicted gene, 38634
Tssr46392 5 64264209 to 64264220 11 + TSS region transcription start site region 46392
Tssr46393 5 64264225 to 64264254 29 + TSS region transcription start site region 46393
Tssr1487 5 64264293 to 64264302 9 + TSS region transcription start site region 1487
Tssr46394 5 64264316 to 64264370 54 + TSS region transcription start site region 46394
Tssr46395 5 64264373 to 64264382 9 + TSS region transcription start site region 46395
Tssr46396 5 64320212 to 64320214 2 + TSS region transcription start site region 46396
Gm6044 5 64320256 to 64320754 498 + pseudogene predicted gene 6044
Tssr46397 5 64360365 to 64360408 43 + TSS region transcription start site region 46397
Gm43838 5 64360514 to 64363631 3117 + lincRNA gene predicted gene 43838
Gm31216 5 64377703 to 64381108 3405 + lncRNA gene predicted gene, 31216
Tssr46398 5 64379217 to 64379233 16 + TSS region transcription start site region 46398
Gm43837 5 64383454 to 64386205 2751 + lincRNA gene predicted gene 43837
Tssr51059 5 64389792 to 64389794 2 - TSS region transcription start site region 51059
Tssr46399 5 64391555 to 64391582 27 + TSS region transcription start site region 46399
Tssr46400 5 64421432 to 64421455 23 + TSS region transcription start site region 46400
D5Mit290 5 64422187 to 64422305 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 290
Tssr1488 5 64423167 to 64423171 4 - TSS region transcription start site region 1488
Gm31363 5 64451879 to 64459098 7219 + lincRNA gene predicted gene, 31363
1700027F09Rik 5 64454813 to 64467942 13129 - lincRNA gene RIKEN cDNA 1700027F09 gene
Tssr51060 5 64467918 to 64467923 5 - TSS region transcription start site region 51060
Tssr51061 5 64467936 to 64467947 11 - TSS region transcription start site region 51061
Tssr51062 5 64467950 to 64467955 5 - TSS region transcription start site region 51062
4930526M16Rik 5 64468057 to 64469010 953 + unclassified gene RIKEN cDNA 4930526M16 gene
C030018K13Rik 5 64477008 to 64483967 6959 + lincRNA gene RIKEN cDNA C030018K13 gene
Tssr46401 5 64487852 to 64487873 21 + TSS region transcription start site region 46401
Tssr46402 5 64505510 to 64505518 8 + TSS region transcription start site region 46402
Tssr46403 5 64515942 to 64515943 1 + TSS region transcription start site region 46403
Gm31423 5 64531928 to 64537825 5897 + lncRNA gene predicted gene, 31423
Gm43836 5 64558183 to 64558563 380 + unclassified gene predicted gene 43836
Gm43835 5 64563771 to 64563919 148 + unclassified gene predicted gene 43835
Gm42566 5 64564177 to 64564819 642 - unclassified gene predicted gene 42566
Tssr46404 5 64576174 to 64576178 4 + TSS region transcription start site region 46404
Gm3716 5 64593863 to 64610699 16836 - lincRNA gene predicted gene 3716
Tssr51063 5 64603139 to 64603186 47 - TSS region transcription start site region 51063
Tssr51064 5 64610691 to 64610709 18 - TSS region transcription start site region 51064
Tssr46405 5 64626852 to 64626860 8 + TSS region transcription start site region 46405
Gm42564 5 64635361 to 64637388 2027 - lincRNA gene predicted gene 42564
Gm42565 5 64635840 to 64637616 1776 + lincRNA gene predicted gene 42565
Gm25306 5 64647633 to 64647749 116 - miRNA gene predicted gene, 25306
D5Mit197 5 64649088 to 64649236 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 197
Tssr51065 5 64680327 to 64680342 15 - TSS region transcription start site region 51065
Tssr51066 5 64680345 to 64680356 11 - TSS region transcription start site region 51066
Gm26761 5 64695461 to 64698521 3060 - lincRNA gene predicted gene, 26761
Gm20033 5 64708210 to 64741937 33727 - lncRNA gene predicted gene, 20033
Tssr46406 5 64781003 to 64781032 29 + TSS region transcription start site region 46406
Tssr46407 5 64797945 to 64797948 3 + TSS region transcription start site region 46407
Gm38457 5 64802365 to 64804975 2610 - protein coding gene predicted gene, 38457
Cpgi15888 5 64802536 to 64804507 1971 CpG island CpG island 15888
Tssr46408 5 64803363 to 64803374 11 + TSS region transcription start site region 46408
Tssr46409 5 64803470 to 64803477 7 + TSS region transcription start site region 46409
Tssr46410 5 64803481 to 64803499 18 + TSS region transcription start site region 46410
Tssr46411 5 64803513 to 64803530 17 + TSS region transcription start site region 46411
Klf3 5 64803523 to 64832903 29380 + protein coding gene Kruppel-like factor 3 (basic)
Tssr46412 5 64803550 to 64803561 11 + TSS region transcription start site region 46412
Tssr46413 5 64803571 to 64803580 9 + TSS region transcription start site region 46413
Tssr46414 5 64803588 to 64803607 19 + TSS region transcription start site region 46414
Tssr46415 5 64803614 to 64803627 13 + TSS region transcription start site region 46415
C230096K16Rik 5 64804014 to 64805735 1721 + protein coding gene RIKEN cDNA C230096K16 gene
Tssr51067 5 64804118 to 64804149 31 - TSS region transcription start site region 51067
Tssr51068 5 64805321 to 64805328 7 - TSS region transcription start site region 51068
Tssr51069 5 64806263 to 64806278 15 - TSS region transcription start site region 51069
Tssr46416 5 64806361 to 64806364 3 + TSS region transcription start site region 46416
Tssr46417 5 64810218 to 64810262 44 + TSS region transcription start site region 46417
Tssr46418 5 64812336 to 64812350 14 + TSS region transcription start site region 46418
Tssr46419 5 64812360 to 64812378 18 + TSS region transcription start site region 46419
Tssr51070 5 64812783 to 64812796 13 - TSS region transcription start site region 51070
Gm31684 5 64816838 to 64819750 2912 + lncRNA gene predicted gene, 31684
Tssr46420 5 64820955 to 64820959 4 + TSS region transcription start site region 46420
Tssr46421 5 64821915 to 64821930 15 + TSS region transcription start site region 46421
Tssr46422 5 64822078 to 64822108 30 + TSS region transcription start site region 46422
Tssr46423 5 64822117 to 64822173 56 + TSS region transcription start site region 46423
Tssr46424 5 64822220 to 64822246 26 + TSS region transcription start site region 46424
Tssr46425 5 64822984 to 64823010 26 + TSS region transcription start site region 46425
Cpgi15889 5 64826596 to 64826757 161 CpG island CpG island 15889
Tssr46426 5 64829879 to 64829900 21 + TSS region transcription start site region 46426
Tssr46427 5 64830018 to 64830045 27 + TSS region transcription start site region 46427
Tssr46428 5 64830464 to 64830468 4 + TSS region transcription start site region 46428
Tssr1489 5 64864766 to 64864788 22 - TSS region transcription start site region 1489
Tssr51071 5 64865454 to 64865504 50 - TSS region transcription start site region 51071
Tssr51072 5 64865545 to 64865560 15 - TSS region transcription start site region 51072
Gm31889 5 64879545 to 64888266 8721 + lncRNA gene predicted gene, 31889
Gm21011 5 64896930 to 64898539 1609 - pseudogene predicted gene, 21011
Tssr51073 5 64899019 to 64899032 13 - TSS region transcription start site region 51073
Tssr46429 5 64899055 to 64899066 11 + TSS region transcription start site region 46429
Tssr46430 5 64899113 to 64899139 26 + TSS region transcription start site region 46430
Tssr46431 5 64906281 to 64906310 29 + TSS region transcription start site region 46431
Tssr46432 5 64909285 to 64909332 47 + TSS region transcription start site region 46432
Tssr46433 5 64910222 to 64910233 11 + TSS region transcription start site region 46433
Tssr46434 5 64910286 to 64910311 25 + TSS region transcription start site region 46434
Tssr46435 5 64917699 to 64917702 3 + TSS region transcription start site region 46435
Tssr46436 5 64924185 to 64924199 14 + TSS region transcription start site region 46436
Tlr1 5 64924679 to 64933563 8884 - protein coding gene toll-like receptor 1
Tssr51074 5 64932891 to 64932904 13 - TSS region transcription start site region 51074
Tssr51075 5 64932911 to 64932952 41 - TSS region transcription start site region 51075
Tssr51076 5 64933550 to 64933606 56 - TSS region transcription start site region 51076
Tlr6 5 64952031 to 64960097 8066 - protein coding gene toll-like receptor 6
Tssr51077 5 64959117 to 64959175 58 - TSS region transcription start site region 51077
Tssr51078 5 64959177 to 64959196 19 - TSS region transcription start site region 51078
Tssr51079 5 64960032 to 64960069 37 - TSS region transcription start site region 51079
Tssr1490 5 64960809 to 64960829 20 - TSS region transcription start site region 1490
Tssr51080 5 64960836 to 64960851 15 - TSS region transcription start site region 51080
Tssr51081 5 64961031 to 64961045 14 - TSS region transcription start site region 51081
Cpgi15890 5 64961035 to 64961224 189 CpG island CpG island 15890
Tssr51082 5 64961049 to 64961064 15 - TSS region transcription start site region 51082
Tssr1491 5 64961329 to 64961337 8 - TSS region transcription start site region 1491
Tssr46437 5 64961432 to 64961439 7 + TSS region transcription start site region 46437
Cpgi15891 5 64969539 to 64970692 1153 CpG island CpG island 15891
Tssr46438 5 64970069 to 64970089 20 + TSS region transcription start site region 46438
Fam114a1 5 64970071 to 65041886 71815 + protein coding gene family with sequence similarity 114, member A1
Tssr46439 5 64970092 to 64970132 40 + TSS region transcription start site region 46439
Mir574 5 64970318 to 64970395 77 + miRNA gene microRNA 574
Gm43627 5 64972650 to 64974948 2298 + unclassified gene predicted gene 43627
Gm32374 5 64992391 to 65020711 28320 - lncRNA gene predicted gene, 32374
Tssr46440 5 65013382 to 65013387 5 + TSS region transcription start site region 46440
Tssr51083 5 65019117 to 65019120 3 - TSS region transcription start site region 51083
Tssr51084 5 65019143 to 65019150 7 - TSS region transcription start site region 51084
Tssr1492 5 65019171 to 65019178 7 - TSS region transcription start site region 1492
Tssr51085 5 65019194 to 65019207 13 - TSS region transcription start site region 51085
Tssr51086 5 65019260 to 65019276 16 - TSS region transcription start site region 51086
Tssr46441 5 65024328 to 65024352 24 + TSS region transcription start site region 46441
Tssr51087 5 65046134 to 65046143 9 - TSS region transcription start site region 51087
Tssr51088 5 65046877 to 65046881 4 - TSS region transcription start site region 51088
Tmem156 5 65058215 to 65092181 33966 - protein coding gene transmembrane protein 156
Tssr1493 5 65080961 to 65080965 4 + TSS region transcription start site region 1493
Tssr51089 5 65091598 to 65091616 18 - TSS region transcription start site region 51089
Tssr51090 5 65091619 to 65091637 18 - TSS region transcription start site region 51090
Cpgi15892 5 65107229 to 65108133 904 CpG island CpG island 15892
Klhl5 5 65107527 to 65168173 60646 + protein coding gene kelch-like 5
Tssr46442 5 65107551 to 65107582 31 + TSS region transcription start site region 46442
Tssr46443 5 65107595 to 65107613 18 + TSS region transcription start site region 46443
Tssr46444 5 65107613 to 65107616 3 + TSS region transcription start site region 46444
Tssr46445 5 65107618 to 65107655 37 + TSS region transcription start site region 46445
Tssr46446 5 65107658 to 65107665 7 + TSS region transcription start site region 46446
Tssr46447 5 65114943 to 65114950 7 + TSS region transcription start site region 46447
Tssr46448 5 65130999 to 65131010 11 + TSS region transcription start site region 46448
Tssr46449 5 65131109 to 65131158 49 + TSS region transcription start site region 46449
Tssr46450 5 65131184 to 65131214 30 + TSS region transcription start site region 46450
Tssr46451 5 65135214 to 65135225 11 + TSS region transcription start site region 46451
Gm25154 5 65136302 to 65136420 118 + rRNA gene predicted gene, 25154
Tssr46452 5 65154979 to 65154990 11 + TSS region transcription start site region 46452
Tssr46453 5 65155095 to 65155103 8 + TSS region transcription start site region 46453
Cpgi15893 5 65175664 to 65175930 266 CpG island CpG island 15893
Cpgi15894 5 65199455 to 65200049 594 CpG island CpG island 15894
Tssr46454 5 65199691 to 65199735 44 + TSS region transcription start site region 46454
Wdr19 5 65199696 to 65260415 60719 + protein coding gene WD repeat domain 19
Tssr1494 5 65247322 to 65247329 7 + TSS region transcription start site region 1494
Tssr46455 5 65250797 to 65250808 11 + TSS region transcription start site region 46455
Rfc1 5 65261850 to 65335670 73820 - protein coding gene replication factor C (activator 1) 1