Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:6385856-8137399

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D5Mit385 5 6409897 to 6409998 101 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 385
Gm24686 5 6410438 to 6410530 92 + snRNA gene predicted gene, 24686
Gm40263 5 6414399 to 6427065 12666 + lincRNA gene predicted gene, 40263
Gm3203 5 6426844 to 6429232 2388 - pseudogene predicted gene 3203
D5Mit123 5 6556176 to 6556323 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 123
Bwq13 5 6556176 to 6556323 147 QTL body weight QTL 13
Gm43324 5 6646520 to 6646808 288 - pseudogene predicted gene 43324
Gm5714 5 6748894 to 6749448 554 - pseudogene predicted gene 5714
Zfp804b 5 6769030 to 7344378 575348 - protein coding gene zinc finger protein 804B
Tssr1419 5 6818536 to 6818540 4 + TSS region transcription start site region 1419
Tssr45095 5 6951726 to 6951734 8 + TSS region transcription start site region 45095
Gm24525 5 7177706 to 7177856 150 - snRNA gene predicted gene, 24525
Cpgi15526 5 7179231 to 7179594 363 CpG island CpG island 15526
Tssr45096 5 7179299 to 7179302 3 + TSS region transcription start site region 45096
Tubb4b-ps1 5 7179365 to 7180700 1335 + pseudogene tubulin, beta 4B class IVB, pseudogene 1
Tssr1420 5 7180030 to 7180050 20 + TSS region transcription start site region 1420
Tssr50074 5 7186422 to 7186428 6 - TSS region transcription start site region 50074
Gm42598 5 7233401 to 7235837 2436 - unclassified gene predicted gene 42598
Gm42597 5 7260856 to 7262399 1543 - unclassified gene predicted gene 42597
Gm43841 5 7276324 to 7276909 585 + pseudogene predicted gene 43841
Tssr45097 5 7304113 to 7304124 11 + TSS region transcription start site region 45097
Tex47 5 7304119 to 7311491 7372 + protein coding gene testis expressed 47
Tssr45098 5 7304128 to 7304152 24 + TSS region transcription start site region 45098
D5Mit145 5 7333014 to 7333165 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 145
Cpgi15527 5 7344227 to 7345111 884 CpG island CpG island 15527
Gm4960 5 7399362 to 7400362 1000 - pseudogene predicted gene 4960
Tssr50075 5 7800888 to 7800890 2 - TSS region transcription start site region 50075
Gm8802 5 7857108 to 7857847 739 + pseudogene predicted gene 8802
Gm22196 5 7888685 to 7888793 108 + miRNA gene predicted gene, 22196
Gm43478 5 7923833 to 7924124 291 + pseudogene predicted gene 43478
Gm30835 5 7945234 to 7960337 15103 - lincRNA gene predicted gene, 30835
Tssr45099 5 7960259 to 7960288 29 + TSS region transcription start site region 45099
Cpgi15528 5 7960269 to 7960556 287 CpG island CpG island 15528
Tssr45100 5 7960445 to 7960464 19 + TSS region transcription start site region 45100
Steap4 5 7960472 to 7982213 21741 + protein coding gene STEAP family member 4
Tssr45101 5 7961085 to 7961101 16 + TSS region transcription start site region 45101
Cpgi15529 5 7971599 to 7971783 184 CpG island CpG island 15529
Tssr45102 5 7972470 to 7972501 31 + TSS region transcription start site region 45102
Gm15731 5 8038795 to 8040180 1385 - antisense lncRNA gene predicted gene 15731
Tssr45103 5 8046077 to 8046078 1 + TSS region transcription start site region 45103
Sri 5 8046078 to 8069314 23236 + protein coding gene sorcin
Tssr45104 5 8046122 to 8046152 30 + TSS region transcription start site region 45104
Tssr45105 5 8046162 to 8046184 22 + TSS region transcription start site region 45105
Tssr45106 5 8055085 to 8055114 29 + TSS region transcription start site region 45106
Gm15730 5 8055139 to 8055553 414 + pseudogene predicted gene 15730
Cpgi15530 5 8056198 to 8056908 710 CpG island CpG island 15530
Tssr45107 5 8056536 to 8056551 15 + TSS region transcription start site region 45107
Tssr45108 5 8056555 to 8056585 30 + TSS region transcription start site region 45108
Tssr45109 5 8065119 to 8065135 16 + TSS region transcription start site region 45109
Tssr45110 5 8065183 to 8065194 11 + TSS region transcription start site region 45110
Tssr45111 5 8065197 to 8065254 57 + TSS region transcription start site region 45111
Tssr45112 5 8067629 to 8067652 23 + TSS region transcription start site region 45112
Tssr50076 5 8067644 to 8067688 44 - TSS region transcription start site region 50076
Tssr45113 5 8068424 to 8068440 16 + TSS region transcription start site region 45113
Tssr45114 5 8068443 to 8068463 20 + TSS region transcription start site region 45114
Tssr45115 5 8068656 to 8068678 22 + TSS region transcription start site region 45115
Adam22 5 8072352 to 8368160 295808 - protein coding gene a disintegrin and metallopeptidase domain 22
Tssr50077 5 8078493 to 8078497 4 - TSS region transcription start site region 50077