Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:63582925-64602984

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfnq1 5 54253768 to 64422305 10168537 QTL lung function QTL 1
Gm30837 5 63561978 to 63624224 62246 - lncRNA gene predicted gene, 30837
Gm9954 5 63646170 to 63650894 4724 - protein coding gene predicted gene 9954
Cpgi15880 5 63649100 to 63650477 1377 CpG island CpG island 15880
Nwd2 5 63649103 to 63810546 161443 + protein coding gene NACHT and WD repeat domain containing 2
Tssr46363 5 63649335 to 63649350 15 + TSS region transcription start site region 46363
Tssr46364 5 63649413 to 63649424 11 + TSS region transcription start site region 46364
Tssr51050 5 63650309 to 63650316 7 - TSS region transcription start site region 51050
Tssr1486 5 63693942 to 63693946 4 + TSS region transcription start site region 1486
Gm3687 5 63694054 to 63694513 459 + pseudogene predicted gene 3687
Tssr46365 5 63784845 to 63784847 2 + TSS region transcription start site region 46365
Cpgi15881 5 63812076 to 63813121 1045 CpG island CpG island 15881
0610040J01Rik 5 63812363 to 63899625 87262 + protein coding gene RIKEN cDNA 0610040J01 gene
Tssr46366 5 63812447 to 63812538 91 + TSS region transcription start site region 46366
Tssr46367 5 63815727 to 63815733 6 + TSS region transcription start site region 46367
Tssr51051 5 63827816 to 63827824 8 - TSS region transcription start site region 51051
Tssr46368 5 63840234 to 63840245 11 + TSS region transcription start site region 46368
Tssr46369 5 63840273 to 63840281 8 + TSS region transcription start site region 46369
Rell1 5 63908897 to 63968897 60000 - protein coding gene RELT-like 1
Gm15819 5 63923901 to 63924970 1069 + antisense lncRNA gene predicted gene 15819
Tssr51052 5 63939551 to 63939587 36 - TSS region transcription start site region 51052
Tssr46370 5 63945617 to 63945618 1 + TSS region transcription start site region 46370
Cpgi15882 5 63953460 to 63953717 257 CpG island CpG island 15882
Tssr51053 5 63953639 to 63953648 9 - TSS region transcription start site region 51053
Tssr46371 5 63967920 to 63967921 1 + TSS region transcription start site region 46371
Cpgi15883 5 63968291 to 63969259 968 CpG island CpG island 15883
Tssr51054 5 63968807 to 63968840 33 - TSS region transcription start site region 51054
Tssr51055 5 63968851 to 63968864 13 - TSS region transcription start site region 51055
Tssr51056 5 63968867 to 63968901 34 - TSS region transcription start site region 51056
Gm43840 5 63990388 to 63990871 483 - pseudogene predicted gene 43840
Gm25608 5 64002353 to 64002484 131 - snoRNA gene predicted gene, 25608
5830416I19Rik 5 64044978 to 64050228 5250 + lincRNA gene RIKEN cDNA 5830416I19 gene
Cpgi15884 5 64092711 to 64093502 791 CpG island CpG island 15884
Tssr46372 5 64092925 to 64092984 59 + TSS region transcription start site region 46372
Pgm2 5 64092950 to 64128351 35401 + protein coding gene phosphoglucomutase 2
Tssr46373 5 64092989 to 64093007 18 + TSS region transcription start site region 46373
Tssr51057 5 64093537 to 64093547 10 - TSS region transcription start site region 51057
D5Mit303 5 64096828 to 64096943 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 303
D5Mit303.1 5 64096905 to 64097027 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 303.1
Gm23967 5 64101430 to 64101507 77 - miRNA gene predicted gene, 23967
Tssr46374 5 64102887 to 64102903 16 + TSS region transcription start site region 46374
Tssr46375 5 64103709 to 64103754 45 + TSS region transcription start site region 46375
Gm22395 5 64107407 to 64107502 95 - miRNA gene predicted gene, 22395
Gm22559 5 64144248 to 64144381 133 + snoRNA gene predicted gene, 22559
Tbc1d1 5 64156310 to 64351486 195176 + protein coding gene TBC1 domain family, member 1
Tssr46376 5 64156515 to 64156533 18 + TSS region transcription start site region 46376
Tssr46377 5 64156535 to 64156553 18 + TSS region transcription start site region 46377
Cpgi15885 5 64159194 to 64160988 1794 CpG island CpG island 15885
Tssr46378 5 64159429 to 64159443 14 + TSS region transcription start site region 46378
Tssr46379 5 64160049 to 64160060 11 + TSS region transcription start site region 46379
Tssr46380 5 64160207 to 64160220 13 + TSS region transcription start site region 46380
Tssr46381 5 64160227 to 64160270 43 + TSS region transcription start site region 46381
Tssr46382 5 64160271 to 64160296 25 + TSS region transcription start site region 46382
Cpgi15886 5 64173461 to 64173711 250 CpG island CpG island 15886
Gm15824 5 64190033 to 64190987 954 - pseudogene predicted gene 15824
Tssr46383 5 64220909 to 64220916 7 + TSS region transcription start site region 46383
Cpgi15887 5 64229825 to 64231044 1219 CpG island CpG island 15887
Tssr46384 5 64230285 to 64230312 27 + TSS region transcription start site region 46384
Tssr46385 5 64230325 to 64230346 21 + TSS region transcription start site region 46385
Tssr46386 5 64230354 to 64230376 22 + TSS region transcription start site region 46386
Tssr46387 5 64230377 to 64230388 11 + TSS region transcription start site region 46387
Tssr46388 5 64230396 to 64230452 56 + TSS region transcription start site region 46388
Tssr46389 5 64230468 to 64230479 11 + TSS region transcription start site region 46389
Tssr46390 5 64230617 to 64230619 2 + TSS region transcription start site region 46390
Gm43721 5 64233930 to 64236242 2312 + unclassified gene predicted gene 43721
Tssr46391 5 64237959 to 64237964 5 + TSS region transcription start site region 46391
Gm46913 5 64247306 to 64248935 1629 + protein coding gene predicted gene, 46913
Gm15823 5 64252556 to 64253225 669 - pseudogene predicted gene 15823
Tssr51058 5 64255137 to 64255157 20 - TSS region transcription start site region 51058
Gm38634 5 64257163 to 64259476 2313 + lncRNA gene predicted gene, 38634
Tssr46392 5 64264209 to 64264220 11 + TSS region transcription start site region 46392
Tssr46393 5 64264225 to 64264254 29 + TSS region transcription start site region 46393
Tssr1487 5 64264293 to 64264302 9 + TSS region transcription start site region 1487
Tssr46394 5 64264316 to 64264370 54 + TSS region transcription start site region 46394
Tssr46395 5 64264373 to 64264382 9 + TSS region transcription start site region 46395
Tssr46396 5 64320212 to 64320214 2 + TSS region transcription start site region 46396
Gm6044 5 64320256 to 64320754 498 + pseudogene predicted gene 6044
Tssr46397 5 64360365 to 64360408 43 + TSS region transcription start site region 46397
Gm43838 5 64360514 to 64363631 3117 + lincRNA gene predicted gene 43838
Gm31216 5 64377703 to 64381108 3405 + lncRNA gene predicted gene, 31216
Tssr46398 5 64379217 to 64379233 16 + TSS region transcription start site region 46398
Gm43837 5 64383454 to 64386205 2751 + lincRNA gene predicted gene 43837
Tssr51059 5 64389792 to 64389794 2 - TSS region transcription start site region 51059
Tssr46399 5 64391555 to 64391582 27 + TSS region transcription start site region 46399
Tssr46400 5 64421432 to 64421455 23 + TSS region transcription start site region 46400
D5Mit290 5 64422187 to 64422305 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 290
Tssr1488 5 64423167 to 64423171 4 - TSS region transcription start site region 1488
Gm31363 5 64451879 to 64459098 7219 + lincRNA gene predicted gene, 31363
1700027F09Rik 5 64454813 to 64467942 13129 - lincRNA gene RIKEN cDNA 1700027F09 gene
Tssr51060 5 64467918 to 64467923 5 - TSS region transcription start site region 51060
Tssr51061 5 64467936 to 64467947 11 - TSS region transcription start site region 51061
Tssr51062 5 64467950 to 64467955 5 - TSS region transcription start site region 51062
4930526M16Rik 5 64468057 to 64469010 953 + unclassified gene RIKEN cDNA 4930526M16 gene
C030018K13Rik 5 64477008 to 64483967 6959 + lincRNA gene RIKEN cDNA C030018K13 gene
Tssr46401 5 64487852 to 64487873 21 + TSS region transcription start site region 46401
Tssr46402 5 64505510 to 64505518 8 + TSS region transcription start site region 46402
Tssr46403 5 64515942 to 64515943 1 + TSS region transcription start site region 46403
Gm31423 5 64531928 to 64537825 5897 + lncRNA gene predicted gene, 31423
Gm43836 5 64558183 to 64558563 380 + unclassified gene predicted gene 43836
Gm43835 5 64563771 to 64563919 148 + unclassified gene predicted gene 43835
Gm42566 5 64564177 to 64564819 642 - unclassified gene predicted gene 42566
Tssr46404 5 64576174 to 64576178 4 + TSS region transcription start site region 46404
Gm3716 5 64593863 to 64610699 16836 - lincRNA gene predicted gene 3716