Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:60217353-64047484

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15876 5 60231361 to 60231523 162 CpG island CpG island 15876
Cbfa2t2-ps1 5 60231483 to 60232212 729 + pseudogene CBFA2/RUNX1 translocation partner 2, pseudogene 1
Gm23331 5 60500833 to 60500940 107 - snRNA gene predicted gene, 23331
Gm43390 5 60578630 to 60579050 420 + pseudogene predicted gene 43390
Gm3372 5 60674317 to 60676108 1791 + pseudogene predicted gene 3372
Gm23708 5 60717317 to 60717439 122 - snoRNA gene predicted gene, 23708
Tssr46352 5 60744683 to 60744691 8 + TSS region transcription start site region 46352
Gm42860 5 60803716 to 60807706 3990 - unclassified gene predicted gene 42860
Gm8182 5 60821659 to 60822427 768 - pseudogene predicted gene 8182
1700014F14Rik 5 60940938 to 60945649 4711 - lincRNA gene RIKEN cDNA 1700014F14 gene
Gm40307 5 60980728 to 60994788 14060 - lncRNA gene predicted gene, 40307
Cpgi15877 5 61068786 to 61069062 276 CpG island CpG island 15877
Gm43382 5 61337896 to 61338733 837 - pseudogene predicted gene 43382
Pcfm4 5 61428500 to 61428622 122 QTL periosteal circumference and femur length 4
D5Mit302 5 61428500 to 61428622 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 302
Gm43383 5 61602570 to 61603038 468 - pseudogene predicted gene 43383
Gm43384 5 61717030 to 61717666 636 - pseudogene predicted gene 43384
Gm40308 5 61764260 to 61774181 9921 - lncRNA gene predicted gene, 40308
Tssr46353 5 61788030 to 61788033 3 + TSS region transcription start site region 46353
Tssr46354 5 61806700 to 61806715 15 + TSS region transcription start site region 46354
Tssr46355 5 61806722 to 61806736 14 + TSS region transcription start site region 46355
Tssr46356 5 61806739 to 61806750 11 + TSS region transcription start site region 46356
G6pd2 5 61808843 to 61810477 1634 + protein coding gene glucose-6-phosphate dehydrogenase 2
Tssr46357 5 61968538 to 61968542 4 + TSS region transcription start site region 46357
Gm42430 5 62004220 to 62004835 615 + pseudogene predicted gene 42430
Gm18344 5 62009285 to 62010007 722 + pseudogene predicted gene, 18344
Gm22273 5 62132353 to 62132484 131 - snoRNA gene predicted gene, 22273
Gm43238 5 62428719 to 62429077 358 + unclassified gene predicted gene 43238
Gm24079 5 62523408 to 62523539 131 - snoRNA gene predicted gene, 24079
Arap2 5 62602445 to 62766159 163714 - protein coding gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
Gm43237 5 62612415 to 62613458 1043 - unclassified gene predicted gene 43237
Gm43753 5 62656799 to 62660107 3308 - unclassified gene predicted gene 43753
Tssr51045 5 62677445 to 62677468 23 - TSS region transcription start site region 51045
Cpgi15878 5 62765576 to 62766674 1098 CpG island CpG island 15878
Tssr51046 5 62765577 to 62765587 10 - TSS region transcription start site region 51046
Tssr51047 5 62765618 to 62765632 14 - TSS region transcription start site region 51047
Tssr51048 5 62766153 to 62766246 93 - TSS region transcription start site region 51048
Tssr46358 5 62766325 to 62766341 16 + TSS region transcription start site region 46358
Tssr51049 5 62766399 to 62766412 13 - TSS region transcription start site region 51049
Tssr46359 5 62811650 to 62811688 38 + TSS region transcription start site region 46359
Dthd1 5 62813823 to 62888308 74485 + protein coding gene death domain containing 1
Tssr46360 5 62818593 to 62818597 4 + TSS region transcription start site region 46360
Tssr46361 5 62858747 to 62858758 11 + TSS region transcription start site region 46361
Tssr46362 5 62880031 to 62880034 3 + TSS region transcription start site region 46362
Cpgi15879 5 62888031 to 62888198 167 CpG island CpG island 15879
D5Mit256 5 62962917 to 62963068 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 256
Tssr1485 5 63164574 to 63164577 3 + TSS region transcription start site region 1485
Mwmlpa4 5 63165263 to 63165263 0 QTL Morris water maze latency to platform, all, 4
Mwmlpt4 5 63165263 to 63165263 0 QTL Morris water maze latency to platform, training, 4
D5Mit200 5 63548099 to 63548203 104 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 200
Gm30837 5 63561978 to 63624224 62246 - lncRNA gene predicted gene, 30837
Gm9954 5 63646170 to 63650894 4724 - protein coding gene predicted gene 9954
Cpgi15880 5 63649100 to 63650477 1377 CpG island CpG island 15880
Nwd2 5 63649103 to 63810546 161443 + protein coding gene NACHT and WD repeat domain containing 2
Tssr46363 5 63649335 to 63649350 15 + TSS region transcription start site region 46363
Tssr46364 5 63649413 to 63649424 11 + TSS region transcription start site region 46364
Tssr51050 5 63650309 to 63650316 7 - TSS region transcription start site region 51050
Tssr1486 5 63693942 to 63693946 4 + TSS region transcription start site region 1486
Gm3687 5 63694054 to 63694513 459 + pseudogene predicted gene 3687
Tssr46365 5 63784845 to 63784847 2 + TSS region transcription start site region 46365
Cpgi15881 5 63812076 to 63813121 1045 CpG island CpG island 15881
0610040J01Rik 5 63812363 to 63899625 87262 + protein coding gene RIKEN cDNA 0610040J01 gene
Tssr46366 5 63812447 to 63812538 91 + TSS region transcription start site region 46366
Tssr46367 5 63815727 to 63815733 6 + TSS region transcription start site region 46367
Tssr51051 5 63827816 to 63827824 8 - TSS region transcription start site region 51051
Tssr46368 5 63840234 to 63840245 11 + TSS region transcription start site region 46368
Tssr46369 5 63840273 to 63840281 8 + TSS region transcription start site region 46369
Rell1 5 63908897 to 63968897 60000 - protein coding gene RELT-like 1
Gm15819 5 63923901 to 63924970 1069 + antisense lncRNA gene predicted gene 15819
Tssr51052 5 63939551 to 63939587 36 - TSS region transcription start site region 51052
Tssr46370 5 63945617 to 63945618 1 + TSS region transcription start site region 46370
Cpgi15882 5 63953460 to 63953717 257 CpG island CpG island 15882
Tssr51053 5 63953639 to 63953648 9 - TSS region transcription start site region 51053
Tssr46371 5 63967920 to 63967921 1 + TSS region transcription start site region 46371
Cpgi15883 5 63968291 to 63969259 968 CpG island CpG island 15883
Tssr51054 5 63968807 to 63968840 33 - TSS region transcription start site region 51054
Tssr51055 5 63968851 to 63968864 13 - TSS region transcription start site region 51055
Tssr51056 5 63968867 to 63968901 34 - TSS region transcription start site region 51056
Gm43840 5 63990388 to 63990871 483 - pseudogene predicted gene 43840
Gm25608 5 64002353 to 64002484 131 - snoRNA gene predicted gene, 25608
5830416I19Rik 5 64044978 to 64050228 5250 + lincRNA gene RIKEN cDNA 5830416I19 gene
Tir5 5 104239199 to 63548099 -40691100 QTL trypanosome infection response 5