Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:57976617-58476628

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcdh7 5 57717967 to 58133230 415263 + protein coding gene protocadherin 7
Tssr46333 5 57978030 to 57978058 28 + TSS region transcription start site region 46333
Gm37720 5 57984212 to 57985452 1240 + sense intronic lncRNA gene predicted gene, 37720
Tssr46334 5 57988018 to 57988041 23 + TSS region transcription start site region 46334
Tssr46335 5 58002724 to 58002736 12 + TSS region transcription start site region 46335
Tssr46336 5 58004881 to 58004895 14 + TSS region transcription start site region 46336
Tssr46337 5 58014606 to 58014626 20 + TSS region transcription start site region 46337
D5Mit1003 5 58030054 to 58030191 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1003
Tssr46338 5 58030147 to 58030153 6 + TSS region transcription start site region 46338
Tssr46339 5 58035387 to 58035391 4 + TSS region transcription start site region 46339
Tssr46340 5 58042781 to 58042811 30 + TSS region transcription start site region 46340
Tssr46341 5 58044365 to 58044383 18 + TSS region transcription start site region 46341
Gm42483 5 58047331 to 58049072 1741 + unclassified gene predicted gene 42483
Tssr46342 5 58059478 to 58059504 26 + TSS region transcription start site region 46342
Tssr46343 5 58109467 to 58109476 9 + TSS region transcription start site region 46343
Gm42486 5 58121439 to 58124924 3485 + unclassified gene predicted gene 42486
Tssr46344 5 58129401 to 58129405 4 + TSS region transcription start site region 46344
Tssr46345 5 58132546 to 58132550 4 + TSS region transcription start site region 46345
Gm42976 5 58149623 to 58149844 221 - pseudogene predicted gene 42976
Gm43045 5 58173434 to 58175528 2094 - unclassified gene predicted gene 43045
Tssr46346 5 58226617 to 58226628 11 + TSS region transcription start site region 46346
Tssr1484 5 58315877 to 58315879 2 + TSS region transcription start site region 1484
Gm46932 5 58320092 to 58323511 3419 - pseudogene predicted gene, 46932
Gm42999 5 58361633 to 58363511 1878 + pseudogene predicted gene 42999
Tssr46347 5 58396658 to 58396660 2 + TSS region transcription start site region 46347
Gm22536 5 58414228 to 58414361 133 + snoRNA gene predicted gene, 22536
4930459L07Rik 5 58443239 to 58452998 9759 - lincRNA gene RIKEN cDNA 4930459L07 gene
1700029E06Rik 5 58453039 to 58455292 2253 + lincRNA gene RIKEN cDNA 1700029E06 gene
Tssr46348 5 58453058 to 58453072 14 + TSS region transcription start site region 46348