Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:56438768-58929081

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114 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42977 5 56414210 to 56490232 76022 + pseudogene predicted gene 42977
A930008L05Rik 5 56595109 to 56595943 834 unclassified gene RIKEN cDNA A930008L05 gene
Gm23896 5 56736090 to 56736219 129 + snoRNA gene predicted gene, 23896
Tssr46282 5 56896481 to 56896484 3 + TSS region transcription start site region 46282
Gm24902 5 57110824 to 57110946 122 + snoRNA gene predicted gene, 24902
Gm23015 5 57128645 to 57128772 127 - snoRNA gene predicted gene, 23015
Gm3283 5 57229266 to 57230615 1349 + pseudogene predicted gene 3283
Gm8115 5 57261317 to 57262005 688 + pseudogene predicted gene 8115
Gm18901 5 57355845 to 57357197 1352 + pseudogene predicted gene, 18901
Gm43706 5 57451626 to 57454277 2651 + unclassified gene predicted gene 43706
Gm6615 5 57460160 to 57460790 630 + pseudogene predicted gene 6615
4932441J04Rik 5 57570084 to 57717919 147835 - lncRNA gene RIKEN cDNA 4932441J04 gene
Gm8121 5 57608569 to 57609067 498 + pseudogene predicted pseudogene 8121
Tssr51038 5 57616952 to 57616953 1 - TSS region transcription start site region 51038
Gm43002 5 57617844 to 57617998 154 + unclassified gene predicted gene 43002
D5Mit269 5 57683768 to 57684081 313 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 269
Gm42634 5 57695997 to 57696377 380 - unclassified gene predicted gene 42634
Cpgi15874 5 57714802 to 57716385 1583 CpG island CpG island 15874
Tssr46283 5 57716165 to 57716173 8 + TSS region transcription start site region 46283
Cpgi15875 5 57716852 to 57720621 3769 CpG island CpG island 15875
Tssr46284 5 57716925 to 57716939 14 + TSS region transcription start site region 46284
Tssr46285 5 57717227 to 57717237 10 + TSS region transcription start site region 46285
Tssr46286 5 57717329 to 57717356 27 + TSS region transcription start site region 46286
Tssr46287 5 57717480 to 57717525 45 + TSS region transcription start site region 46287
Tssr46288 5 57717533 to 57717555 22 + TSS region transcription start site region 46288
Tssr46289 5 57717661 to 57717673 12 + TSS region transcription start site region 46289
Tssr46290 5 57717745 to 57717771 26 + TSS region transcription start site region 46290
Pcdh7 5 57717967 to 58133230 415263 + protein coding gene protocadherin 7
Tssr46291 5 57718035 to 57718104 69 + TSS region transcription start site region 46291
Tssr1483 5 57718138 to 57718150 12 + TSS region transcription start site region 1483
Tssr46292 5 57718264 to 57718307 43 + TSS region transcription start site region 46292
Tssr51039 5 57718958 to 57718964 6 - TSS region transcription start site region 51039
Tssr46293 5 57719061 to 57719114 53 + TSS region transcription start site region 46293
Tssr46294 5 57721865 to 57721875 10 + TSS region transcription start site region 46294
Tssr46295 5 57721998 to 57722009 11 + TSS region transcription start site region 46295
Gm42635 5 57724393 to 57726963 2570 + unclassified gene predicted gene 42635
Tssr46296 5 57727292 to 57727294 2 + TSS region transcription start site region 46296
Tssr46297 5 57728231 to 57728249 18 + TSS region transcription start site region 46297
Tssr46298 5 57728778 to 57728809 31 + TSS region transcription start site region 46298
Tssr46299 5 57731616 to 57731637 21 + TSS region transcription start site region 46299
Tssr46300 5 57731679 to 57731688 9 + TSS region transcription start site region 46300
Tssr46301 5 57731702 to 57731709 7 + TSS region transcription start site region 46301
Tssr46302 5 57731723 to 57731737 14 + TSS region transcription start site region 46302
Tssr46303 5 57755321 to 57755365 44 + TSS region transcription start site region 46303
Tssr46304 5 57767641 to 57767661 20 + TSS region transcription start site region 46304
Gm42481 5 57778873 to 57781050 2177 + unclassified gene predicted gene 42481
D5Mit5 5 57783110 to 57783251 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 5
Tssr46305 5 57785981 to 57786003 22 + TSS region transcription start site region 46305
Tssr46306 5 57788997 to 57789015 18 + TSS region transcription start site region 46306
Gm42480 5 57793159 to 57795753 2594 + unclassified gene predicted gene 42480
Tssr46307 5 57793250 to 57793254 4 + TSS region transcription start site region 46307
Gm42482 5 57798503 to 57800449 1946 + unclassified gene predicted gene 42482
Tssr46308 5 57800373 to 57800386 13 + TSS region transcription start site region 46308
Tssr46309 5 57810251 to 57810253 2 + TSS region transcription start site region 46309
Tssr46310 5 57821913 to 57821918 5 + TSS region transcription start site region 46310
Tssr46311 5 57830132 to 57830142 10 + TSS region transcription start site region 46311
Tssr46312 5 57843330 to 57843380 50 + TSS region transcription start site region 46312
Tssr46313 5 57859222 to 57859225 3 + TSS region transcription start site region 46313
Tssr46314 5 57867479 to 57867488 9 + TSS region transcription start site region 46314
Gm17977 5 57899734 to 57900307 573 + pseudogene predicted gene, 17977
Gm43715 5 57904639 to 57907353 2714 + unclassified gene predicted gene 43715
Tssr46315 5 57913372 to 57913386 14 + TSS region transcription start site region 46315
Tssr46316 5 57918545 to 57918553 8 + TSS region transcription start site region 46316
Tssr46317 5 57918726 to 57918738 12 + TSS region transcription start site region 46317
Tssr46318 5 57918763 to 57918775 12 + TSS region transcription start site region 46318
Tssr46319 5 57919564 to 57919568 4 + TSS region transcription start site region 46319
Tssr46320 5 57919815 to 57919826 11 + TSS region transcription start site region 46320
Tssr46321 5 57919875 to 57919888 13 + TSS region transcription start site region 46321
Tssr46322 5 57919901 to 57919912 11 + TSS region transcription start site region 46322
Tssr46323 5 57920224 to 57920237 13 + TSS region transcription start site region 46323
Tssr46324 5 57920240 to 57920255 15 + TSS region transcription start site region 46324
Tssr46325 5 57920306 to 57920327 21 + TSS region transcription start site region 46325
Gm42479 5 57925620 to 57926975 1355 + unclassified gene predicted gene 42479
Tssr46326 5 57928312 to 57928357 45 + TSS region transcription start site region 46326
Gm42478 5 57929750 to 57931216 1466 + unclassified gene predicted gene 42478
Tssr46327 5 57937030 to 57937050 20 + TSS region transcription start site region 46327
Gm42639 5 57945042 to 57946912 1870 + unclassified gene predicted gene 42639
Tssr46328 5 57947940 to 57947961 21 + TSS region transcription start site region 46328
Tssr46329 5 57948001 to 57948013 12 + TSS region transcription start site region 46329
Tssr46330 5 57959117 to 57959121 4 + TSS region transcription start site region 46330
Gm42640 5 57961594 to 57962788 1194 + unclassified gene predicted gene 42640
Tssr46331 5 57963596 to 57963638 42 + TSS region transcription start site region 46331
Tssr46332 5 57965189 to 57965196 7 + TSS region transcription start site region 46332
Gm42484 5 57965414 to 57967517 2103 + unclassified gene predicted gene 42484
Tssr46333 5 57978030 to 57978058 28 + TSS region transcription start site region 46333
Gm37720 5 57984212 to 57985452 1240 + sense intronic lncRNA gene predicted gene, 37720
Tssr46334 5 57988018 to 57988041 23 + TSS region transcription start site region 46334
Tssr46335 5 58002724 to 58002736 12 + TSS region transcription start site region 46335
Tssr46336 5 58004881 to 58004895 14 + TSS region transcription start site region 46336
Tssr46337 5 58014606 to 58014626 20 + TSS region transcription start site region 46337
D5Mit1003 5 58030054 to 58030191 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1003
Tssr46338 5 58030147 to 58030153 6 + TSS region transcription start site region 46338
Tssr46339 5 58035387 to 58035391 4 + TSS region transcription start site region 46339
Tssr46340 5 58042781 to 58042811 30 + TSS region transcription start site region 46340
Tssr46341 5 58044365 to 58044383 18 + TSS region transcription start site region 46341
Gm42483 5 58047331 to 58049072 1741 + unclassified gene predicted gene 42483
Tssr46342 5 58059478 to 58059504 26 + TSS region transcription start site region 46342
Tssr46343 5 58109467 to 58109476 9 + TSS region transcription start site region 46343
Gm42486 5 58121439 to 58124924 3485 + unclassified gene predicted gene 42486
Tssr46344 5 58129401 to 58129405 4 + TSS region transcription start site region 46344
Tssr46345 5 58132546 to 58132550 4 + TSS region transcription start site region 46345
Gm42976 5 58149623 to 58149844 221 - pseudogene predicted gene 42976
Gm43045 5 58173434 to 58175528 2094 - unclassified gene predicted gene 43045
Tssr46346 5 58226617 to 58226628 11 + TSS region transcription start site region 46346
Tssr1484 5 58315877 to 58315879 2 + TSS region transcription start site region 1484
Gm46932 5 58320092 to 58323511 3419 - pseudogene predicted gene, 46932
Gm42999 5 58361633 to 58363511 1878 + pseudogene predicted gene 42999
Tssr46347 5 58396658 to 58396660 2 + TSS region transcription start site region 46347
Gm22536 5 58414228 to 58414361 133 + snoRNA gene predicted gene, 22536
4930459L07Rik 5 58443239 to 58452998 9759 - lincRNA gene RIKEN cDNA 4930459L07 gene
1700029E06Rik 5 58453039 to 58455292 2253 + lincRNA gene RIKEN cDNA 1700029E06 gene
Tssr46348 5 58453058 to 58453072 14 + TSS region transcription start site region 46348
Gm40306 5 58790116 to 58796839 6723 + lncRNA gene predicted gene, 40306
Tssr46349 5 58828021 to 58828036 15 + TSS region transcription start site region 46349