Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:5535856-8987399

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184 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtpbp10 5 5537454 to 5559538 22084 - protein coding gene GTP-binding protein 10 (putative)
Cpgi15521 5 5559176 to 5559804 628 CpG island CpG island 15521
Tssr50057 5 5559501 to 5559517 16 - TSS region transcription start site region 50057
Tssr50058 5 5559521 to 5559545 24 - TSS region transcription start site region 50058
Gm30652 5 5567328 to 5567757 429 + pseudogene predicted gene, 30652
Gm8773 5 5573799 to 5576203 2404 + lincRNA gene predicted gene 8773
Cpgi15522 5 5573814 to 5574328 514 CpG island CpG island 15522
Tssr45092 5 5573994 to 5574013 19 + TSS region transcription start site region 45092
Cfap69 5 5579278 to 5664239 84961 - protein coding gene cilia and flagella associated protein 69
n-TUtca1 5 5627681 to 5627751 70 + tRNA gene nuclear encoded tRNA selenocysteine 1 (anticodon TCA)
Tssr1417 5 5644794 to 5644795 1 + TSS region transcription start site region 1417
Tssr50059 5 5663207 to 5663221 14 - TSS region transcription start site region 50059
Tssr50060 5 5663263 to 5663294 31 - TSS region transcription start site region 50060
Cpgi15523 5 5663755 to 5664386 631 CpG island CpG island 15523
Tssr50061 5 5664176 to 5664181 5 - TSS region transcription start site region 50061
Tssr50062 5 5664183 to 5664192 9 - TSS region transcription start site region 50062
Tssr50063 5 5664196 to 5664253 57 - TSS region transcription start site region 50063
Gm40262 5 5664289 to 5716533 52244 + lncRNA gene predicted gene, 40262
Steap2 5 5664829 to 5694568 29739 - protein coding gene six transmembrane epithelial antigen of prostate 2
D5Mit417 5 5692220 to 5692365 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 417
Cpgi15524 5 5693614 to 5694706 1092 CpG island CpG island 15524
Tssr50064 5 5694024 to 5694109 85 - TSS region transcription start site region 50064
Tssr50065 5 5694269 to 5694312 43 - TSS region transcription start site region 50065
Tssr50066 5 5694436 to 5694447 11 - TSS region transcription start site region 50066
Tssr50067 5 5694480 to 5694491 11 - TSS region transcription start site region 50067
Tssr50068 5 5694499 to 5694539 40 - TSS region transcription start site region 50068
Tssr50069 5 5694559 to 5694581 22 - TSS region transcription start site region 50069
Gm43219 5 5696858 to 5698794 1936 + unclassified gene predicted gene 43219
Steap1 5 5736322 to 5749317 12995 - protein coding gene six transmembrane epithelial antigen of the prostate 1
Gm46900 5 5743074 to 5749621 6547 + protein coding gene predicted gene, 46900
Cpgi15525 5 5748778 to 5749881 1103 CpG island CpG island 15525
Tssr50070 5 5749285 to 5749315 30 - TSS region transcription start site region 50070
Tssr50071 5 5749317 to 5749340 23 - TSS region transcription start site region 50071
Tssr45093 5 5754765 to 5754768 3 + TSS region transcription start site region 45093
Gm26825 5 5781530 to 5783636 2106 + lincRNA gene predicted gene, 26825
Gm15459 5 5781615 to 5783555 1940 - pseudogene predicted gene 15459
Tssr50072 5 5783443 to 5783477 34 - TSS region transcription start site region 50072
Tssr50073 5 5783629 to 5783638 9 - TSS region transcription start site region 50073
Gm38697 5 5798197 to 5799942 1745 + pseudogene predicted gene, 38697
Gm5984 5 5806872 to 5810573 3701 + lncRNA gene predicted gene 5984
Tssr45094 5 5890985 to 5890986 1 + TSS region transcription start site region 45094
Gm23838 5 6014863 to 6015024 161 - snRNA gene predicted gene, 23838
Tssr1418 5 6104286 to 6104287 1 - TSS region transcription start site region 1418
Gm42718 5 6311311 to 6313991 2680 - pseudogene predicted gene 42718
Gm42719 5 6358836 to 6359190 354 + pseudogene predicted gene 42719
D5Mit385 5 6409897 to 6409998 101 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 385
Gm24686 5 6410438 to 6410530 92 + snRNA gene predicted gene, 24686
Gm40263 5 6414399 to 6427065 12666 + lincRNA gene predicted gene, 40263
Gm3203 5 6426844 to 6429232 2388 - pseudogene predicted gene 3203
D5Mit123 5 6556176 to 6556323 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 123
Bwq13 5 6556176 to 6556323 147 QTL body weight QTL 13
Gm43324 5 6646520 to 6646808 288 - pseudogene predicted gene 43324
Gm5714 5 6748894 to 6749448 554 - pseudogene predicted gene 5714
Zfp804b 5 6769030 to 7344378 575348 - protein coding gene zinc finger protein 804B
Tssr1419 5 6818536 to 6818540 4 + TSS region transcription start site region 1419
Tssr45095 5 6951726 to 6951734 8 + TSS region transcription start site region 45095
Gm24525 5 7177706 to 7177856 150 - snRNA gene predicted gene, 24525
Cpgi15526 5 7179231 to 7179594 363 CpG island CpG island 15526
Tssr45096 5 7179299 to 7179302 3 + TSS region transcription start site region 45096
Tubb4b-ps1 5 7179365 to 7180700 1335 + pseudogene tubulin, beta 4B class IVB, pseudogene 1
Tssr1420 5 7180030 to 7180050 20 + TSS region transcription start site region 1420
Tssr50074 5 7186422 to 7186428 6 - TSS region transcription start site region 50074
Gm42598 5 7233401 to 7235837 2436 - unclassified gene predicted gene 42598
Gm42597 5 7260856 to 7262399 1543 - unclassified gene predicted gene 42597
Gm43841 5 7276324 to 7276909 585 + pseudogene predicted gene 43841
Tssr45097 5 7304113 to 7304124 11 + TSS region transcription start site region 45097
Tex47 5 7304119 to 7311491 7372 + protein coding gene testis expressed 47
Tssr45098 5 7304128 to 7304152 24 + TSS region transcription start site region 45098
D5Mit145 5 7333014 to 7333165 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 145
Cpgi15527 5 7344227 to 7345111 884 CpG island CpG island 15527
Gm4960 5 7399362 to 7400362 1000 - pseudogene predicted gene 4960
Tssr50075 5 7800888 to 7800890 2 - TSS region transcription start site region 50075
Gm8802 5 7857108 to 7857847 739 + pseudogene predicted gene 8802
Gm22196 5 7888685 to 7888793 108 + miRNA gene predicted gene, 22196
Gm43478 5 7923833 to 7924124 291 + pseudogene predicted gene 43478
Gm30835 5 7945234 to 7960337 15103 - lincRNA gene predicted gene, 30835
Tssr45099 5 7960259 to 7960288 29 + TSS region transcription start site region 45099
Cpgi15528 5 7960269 to 7960556 287 CpG island CpG island 15528
Tssr45100 5 7960445 to 7960464 19 + TSS region transcription start site region 45100
Steap4 5 7960472 to 7982213 21741 + protein coding gene STEAP family member 4
Tssr45101 5 7961085 to 7961101 16 + TSS region transcription start site region 45101
Cpgi15529 5 7971599 to 7971783 184 CpG island CpG island 15529
Tssr45102 5 7972470 to 7972501 31 + TSS region transcription start site region 45102
Gm15731 5 8038795 to 8040180 1385 - antisense lncRNA gene predicted gene 15731
Tssr45103 5 8046077 to 8046078 1 + TSS region transcription start site region 45103
Sri 5 8046078 to 8069314 23236 + protein coding gene sorcin
Tssr45104 5 8046122 to 8046152 30 + TSS region transcription start site region 45104
Tssr45105 5 8046162 to 8046184 22 + TSS region transcription start site region 45105
Tssr45106 5 8055085 to 8055114 29 + TSS region transcription start site region 45106
Gm15730 5 8055139 to 8055553 414 + pseudogene predicted gene 15730
Cpgi15530 5 8056198 to 8056908 710 CpG island CpG island 15530
Tssr45107 5 8056536 to 8056551 15 + TSS region transcription start site region 45107
Tssr45108 5 8056555 to 8056585 30 + TSS region transcription start site region 45108
Tssr45109 5 8065119 to 8065135 16 + TSS region transcription start site region 45109
Tssr45110 5 8065183 to 8065194 11 + TSS region transcription start site region 45110
Tssr45111 5 8065197 to 8065254 57 + TSS region transcription start site region 45111
Tssr45112 5 8067629 to 8067652 23 + TSS region transcription start site region 45112
Tssr50076 5 8067644 to 8067688 44 - TSS region transcription start site region 50076
Tssr45113 5 8068424 to 8068440 16 + TSS region transcription start site region 45113
Tssr45114 5 8068443 to 8068463 20 + TSS region transcription start site region 45114
Tssr45115 5 8068656 to 8068678 22 + TSS region transcription start site region 45115
Adam22 5 8072352 to 8368160 295808 - protein coding gene a disintegrin and metallopeptidase domain 22
Tssr50077 5 8078493 to 8078497 4 - TSS region transcription start site region 50077
Tssr50078 5 8162155 to 8162159 4 - TSS region transcription start site region 50078
Gm21759 5 8179636 to 8181463 1827 + pseudogene predicted gene, 21759
Gm24196 5 8203866 to 8203975 109 - miRNA gene predicted gene, 24196
Gm23993 5 8242723 to 8242866 143 + snoRNA gene predicted gene, 23993
Gm18037 5 8316032 to 8316559 527 + pseudogene predicted gene, 18037
Gm42490 5 8327332 to 8329395 2063 - unclassified gene predicted gene 42490
Tssr50079 5 8353481 to 8353487 6 - TSS region transcription start site region 50079
Cpgi15531 5 8366993 to 8367509 516 CpG island CpG island 15531
Cpgi15532 5 8367793 to 8368457 664 CpG island CpG island 15532
Tssr50080 5 8368049 to 8368107 58 - TSS region transcription start site region 50080
Tssr50081 5 8368110 to 8368115 5 - TSS region transcription start site region 50081
Tssr50082 5 8368118 to 8368152 34 - TSS region transcription start site region 50082
Tssr50083 5 8368168 to 8368181 13 - TSS region transcription start site region 50083
Tssr50084 5 8368183 to 8368216 33 - TSS region transcription start site region 50084
Tssr50085 5 8368242 to 8368262 20 - TSS region transcription start site region 50085
Dbf4 5 8396973 to 8422716 25743 - protein coding gene DBF4 zinc finger
Cpgi15533 5 8422085 to 8423290 1205 CpG island CpG island 15533
Tssr50086 5 8422642 to 8422693 51 - TSS region transcription start site region 50086
Tssr50087 5 8422695 to 8422727 32 - TSS region transcription start site region 50087
Tssr45116 5 8422831 to 8422906 75 + TSS region transcription start site region 45116
Slc25a40 5 8422850 to 8454797 31947 + protein coding gene solute carrier family 25, member 40
Tssr45117 5 8422908 to 8422925 17 + TSS region transcription start site region 45117
Tssr50088 5 8424205 to 8424238 33 - TSS region transcription start site region 50088
Rundc3b 5 8490334 to 8622952 132618 - protein coding gene RUN domain containing 3B
Gm42685 5 8512463 to 8514852 2389 - unclassified gene predicted gene 42685
Tssr45118 5 8567093 to 8567110 17 + TSS region transcription start site region 45118
Tssr45119 5 8567113 to 8567123 10 + TSS region transcription start site region 45119
Tssr45120 5 8606564 to 8606568 4 + TSS region transcription start site region 45120
Cpgi15534 5 8622087 to 8623568 1481 CpG island CpG island 15534
Tssr50089 5 8622768 to 8622854 86 - TSS region transcription start site region 50089
Tssr50090 5 8622855 to 8622921 66 - TSS region transcription start site region 50090
Tssr50091 5 8622951 to 8622970 19 - TSS region transcription start site region 50091
Tssr50092 5 8622984 to 8622998 14 - TSS region transcription start site region 50092
Tssr50093 5 8623004 to 8623051 47 - TSS region transcription start site region 50093
Tssr45121 5 8659958 to 8659960 2 + TSS region transcription start site region 45121
Tssr45122 5 8660021 to 8660028 7 + TSS region transcription start site region 45122
Tssr45123 5 8660040 to 8660047 7 + TSS region transcription start site region 45123
Tssr45124 5 8660059 to 8660099 40 + TSS region transcription start site region 45124
Abcb1a 5 8660077 to 8748575 88498 + protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 1A
Cpgi15535 5 8660191 to 8660586 395 CpG island CpG island 15535
Tssr45125 5 8660605 to 8660623 18 + TSS region transcription start site region 45125
Tssr45126 5 8660633 to 8660652 19 + TSS region transcription start site region 45126
Gm42684 5 8669520 to 8673134 3614 + unclassified gene predicted gene 42684
Gm31157 5 8692556 to 8695776 3220 - lncRNA gene predicted gene, 31157
Tssr45127 5 8728205 to 8728209 4 + TSS region transcription start site region 45127
Gm42686 5 8731661 to 8735768 4107 - unclassified gene predicted gene 42686
Gm5106 5 8781186 to 8798729 17543 - antisense lncRNA gene predicted gene 5106
D5Mit48 5 8797672 to 8797875 203 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 48
Cpgi15536 5 8798076 to 8798718 642 CpG island CpG island 15536
Tssr45128 5 8798139 to 8798164 25 + TSS region transcription start site region 45128
Abcb1b 5 8798147 to 8866314 68167 + protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 1B
Tssr45129 5 8798644 to 8798654 10 + TSS region transcription start site region 45129
Tssr45130 5 8798677 to 8798684 7 + TSS region transcription start site region 45130
Tssr45131 5 8799777 to 8799780 3 + TSS region transcription start site region 45131
Tssr45132 5 8808095 to 8808106 11 + TSS region transcription start site region 45132
7330423F06Rik 5 8831147 to 8831447 300 + unclassified gene RIKEN cDNA 7330423F06 gene
Tssr45133 5 8833458 to 8833460 2 + TSS region transcription start site region 45133
D5Mit146 5 8840693 to 8840817 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 146
D5Mit47 5 8865949 to 8866062 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 47
Cpgi15537 5 8893334 to 8894242 908 CpG island CpG island 15537
Tssr45134 5 8893568 to 8893580 12 + TSS region transcription start site region 45134
Tssr45135 5 8893606 to 8893617 11 + TSS region transcription start site region 45135
Tssr45136 5 8893677 to 8893745 68 + TSS region transcription start site region 45136
Abcb4 5 8893717 to 8959231 65514 + protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 4
Tssr45137 5 8893829 to 8893840 11 + TSS region transcription start site region 45137
Tssr45138 5 8893856 to 8893896 40 + TSS region transcription start site region 45138
Tssr45139 5 8893900 to 8893911 11 + TSS region transcription start site region 45139
Tssr45140 5 8893913 to 8893916 3 + TSS region transcription start site region 45140
Tssr45141 5 8893923 to 8893932 9 + TSS region transcription start site region 45141
Tssr45142 5 8893943 to 8893954 11 + TSS region transcription start site region 45142
Cpgi15538 5 8912750 to 8913110 360 CpG island CpG island 15538
Tssr45143 5 8912759 to 8912763 4 + TSS region transcription start site region 45143
Gm17936 5 8912974 to 8913954 980 + pseudogene predicted gene, 17936
Gm31388 5 8936829 to 8944505 7676 - lncRNA gene predicted gene, 31388
Tssr45144 5 8957179 to 8957183 4 + TSS region transcription start site region 45144
Crot 5 8966033 to 8997146 31113 - protein coding gene carnitine O-octanoyltransferase
Tssr45145 5 8971911 to 8971920 9 + TSS region transcription start site region 45145
Gm15610 5 8971948 to 8972142 194 + pseudogene predicted gene 15610
Mom5 5 33318293 to 8797672 -24520621 QTL modifier of Min 5
Kdnw1 5 40372526 to 8865949 -31506577 QTL kidney weight 1
Sle6 5 87693978 to 8840693 -78853285 QTL systemic lupus erythematosus susceptibility 6