Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:54202338-58112650

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmtb10 5 21895825 to 54342976 32447151 QTL hemostasis and thrombosis 10
D5Mit133 5 54253768 to 54253917 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 133
Lfnq1 5 54253768 to 64422305 10168537 QTL lung function QTL 1
D5Mit395 5 54328256 to 54328380 124 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 395
D5Mit395.1 5 54328352 to 54328475 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 395.1
D5Mit394 5 54342835 to 54342976 141 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 394
Gm10440 5 54349992 to 54358542 8550 + lincRNA gene predicted gene 10440
Tssr46276 5 54377542 to 54377550 8 + TSS region transcription start site region 46276
Tssr46277 5 54377556 to 54377566 10 + TSS region transcription start site region 46277
D5Mit300 5 54486435 to 54486554 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 300
Ahl11 5 54486435 to 54486554 119 QTL age related hearing loss, early onset 11
Gm18451 5 54569905 to 54578012 8107 + pseudogene predicted gene, 18451
Gm8069 5 54651968 to 54652121 153 - pseudogene predicted pseudogene 8069
Cpgi15873 5 54760493 to 54760670 177 CpG island CpG island 15873
D5Mit301 5 54806258 to 54806383 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 301
Gm43781 5 54807334 to 54810014 2680 + unclassified gene predicted gene 43781
Gm24235 5 54827215 to 54827343 128 + snoRNA gene predicted gene, 24235
Gbvq1 5 54954339 to 54954456 117 QTL gallstone bladder volume QTL 1
D5Mit255 5 54954339 to 54954456 117 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 255
Ahl12 5 54954339 to 54954456 117 QTL age related hearing loss, early onset 12
rslk 5 54954339 to 81227149 26272810 heritable phenotypic marker recessive spotting-like
Tssr1482 5 54959306 to 54959308 2 + TSS region transcription start site region 1482
Gm43779 5 54996620 to 54997448 828 + pseudogene predicted gene 43779
D5Mit254 5 55230992 to 55231125 133 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 254
Gm25513 5 55303420 to 55303581 161 - snRNA gene predicted gene, 25513
Gm43780 5 55503529 to 55507128 3599 + unclassified gene predicted gene 43780
Gm43396 5 55583645 to 55584350 705 - pseudogene predicted gene 43396
Gm43199 5 55584494 to 55584800 306 + pseudogene predicted gene 43199
Gm15975 5 55624190 to 55625591 1401 + pseudogene predicted gene 15975
Tssr46278 5 55624580 to 55624607 27 + TSS region transcription start site region 46278
Tssr46279 5 55624931 to 55624953 22 + TSS region transcription start site region 46279
Gm43778 5 55652949 to 55653147 198 + unclassified gene predicted gene 43778
Gm20223 5 55722617 to 55723421 804 - pseudogene predicted gene, 20223
Tlcpl2 5 55758174 to 55758174 0 QTL tail clip latency 2
Gm43705 5 55789171 to 55792887 3716 - unclassified gene predicted gene 43705
Gm30778 5 55803225 to 55821093 17868 - lncRNA gene predicted gene, 30778
D5Mit184 5 56011681 to 56011806 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 184
Tssr46280 5 56050423 to 56050426 3 + TSS region transcription start site region 46280
Tssr46281 5 56157305 to 56157306 1 + TSS region transcription start site region 46281
Gm43315 5 56157338 to 56157650 312 + pseudogene predicted gene 43315
Gm42977 5 56414210 to 56490232 76022 + pseudogene predicted gene 42977
A930008L05Rik 5 56595109 to 56595943 834 unclassified gene RIKEN cDNA A930008L05 gene
Gm23896 5 56736090 to 56736219 129 + snoRNA gene predicted gene, 23896
Tssr46282 5 56896481 to 56896484 3 + TSS region transcription start site region 46282
Gm24902 5 57110824 to 57110946 122 + snoRNA gene predicted gene, 24902
Gm23015 5 57128645 to 57128772 127 - snoRNA gene predicted gene, 23015
Gm3283 5 57229266 to 57230615 1349 + pseudogene predicted gene 3283
Gm8115 5 57261317 to 57262005 688 + pseudogene predicted gene 8115
Gm18901 5 57355845 to 57357197 1352 + pseudogene predicted gene, 18901
Gm43706 5 57451626 to 57454277 2651 + unclassified gene predicted gene 43706
Gm6615 5 57460160 to 57460790 630 + pseudogene predicted gene 6615
4932441J04Rik 5 57570084 to 57717919 147835 - lncRNA gene RIKEN cDNA 4932441J04 gene
Gm8121 5 57608569 to 57609067 498 + pseudogene predicted pseudogene 8121
Tssr51038 5 57616952 to 57616953 1 - TSS region transcription start site region 51038
Gm43002 5 57617844 to 57617998 154 + unclassified gene predicted gene 43002
D5Mit269 5 57683768 to 57684081 313 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 269
Gm42634 5 57695997 to 57696377 380 - unclassified gene predicted gene 42634
Cpgi15874 5 57714802 to 57716385 1583 CpG island CpG island 15874
Tssr46283 5 57716165 to 57716173 8 + TSS region transcription start site region 46283
Cpgi15875 5 57716852 to 57720621 3769 CpG island CpG island 15875
Tssr46284 5 57716925 to 57716939 14 + TSS region transcription start site region 46284
Tssr46285 5 57717227 to 57717237 10 + TSS region transcription start site region 46285
Tssr46286 5 57717329 to 57717356 27 + TSS region transcription start site region 46286
Tssr46287 5 57717480 to 57717525 45 + TSS region transcription start site region 46287
Tssr46288 5 57717533 to 57717555 22 + TSS region transcription start site region 46288
Tssr46289 5 57717661 to 57717673 12 + TSS region transcription start site region 46289
Tssr46290 5 57717745 to 57717771 26 + TSS region transcription start site region 46290
Pcdh7 5 57717967 to 58133230 415263 + protein coding gene protocadherin 7
Tssr46291 5 57718035 to 57718104 69 + TSS region transcription start site region 46291
Tssr1483 5 57718138 to 57718150 12 + TSS region transcription start site region 1483
Tssr46292 5 57718264 to 57718307 43 + TSS region transcription start site region 46292
Tssr51039 5 57718958 to 57718964 6 - TSS region transcription start site region 51039
Tssr46293 5 57719061 to 57719114 53 + TSS region transcription start site region 46293
Tssr46294 5 57721865 to 57721875 10 + TSS region transcription start site region 46294
Tssr46295 5 57721998 to 57722009 11 + TSS region transcription start site region 46295
Gm42635 5 57724393 to 57726963 2570 + unclassified gene predicted gene 42635
Tssr46296 5 57727292 to 57727294 2 + TSS region transcription start site region 46296
Tssr46297 5 57728231 to 57728249 18 + TSS region transcription start site region 46297
Tssr46298 5 57728778 to 57728809 31 + TSS region transcription start site region 46298
Tssr46299 5 57731616 to 57731637 21 + TSS region transcription start site region 46299
Tssr46300 5 57731679 to 57731688 9 + TSS region transcription start site region 46300
Tssr46301 5 57731702 to 57731709 7 + TSS region transcription start site region 46301
Tssr46302 5 57731723 to 57731737 14 + TSS region transcription start site region 46302
Tssr46303 5 57755321 to 57755365 44 + TSS region transcription start site region 46303
Tssr46304 5 57767641 to 57767661 20 + TSS region transcription start site region 46304
Gm42481 5 57778873 to 57781050 2177 + unclassified gene predicted gene 42481
D5Mit5 5 57783110 to 57783251 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 5
Tssr46305 5 57785981 to 57786003 22 + TSS region transcription start site region 46305
Tssr46306 5 57788997 to 57789015 18 + TSS region transcription start site region 46306
Gm42480 5 57793159 to 57795753 2594 + unclassified gene predicted gene 42480
Tssr46307 5 57793250 to 57793254 4 + TSS region transcription start site region 46307
Gm42482 5 57798503 to 57800449 1946 + unclassified gene predicted gene 42482
Tssr46308 5 57800373 to 57800386 13 + TSS region transcription start site region 46308
Tssr46309 5 57810251 to 57810253 2 + TSS region transcription start site region 46309
Tssr46310 5 57821913 to 57821918 5 + TSS region transcription start site region 46310
Tssr46311 5 57830132 to 57830142 10 + TSS region transcription start site region 46311
Tssr46312 5 57843330 to 57843380 50 + TSS region transcription start site region 46312
Tssr46313 5 57859222 to 57859225 3 + TSS region transcription start site region 46313
Tssr46314 5 57867479 to 57867488 9 + TSS region transcription start site region 46314
Gm17977 5 57899734 to 57900307 573 + pseudogene predicted gene, 17977
Gm43715 5 57904639 to 57907353 2714 + unclassified gene predicted gene 43715
Tssr46315 5 57913372 to 57913386 14 + TSS region transcription start site region 46315
Tssr46316 5 57918545 to 57918553 8 + TSS region transcription start site region 46316
Tssr46317 5 57918726 to 57918738 12 + TSS region transcription start site region 46317
Tssr46318 5 57918763 to 57918775 12 + TSS region transcription start site region 46318
Tssr46319 5 57919564 to 57919568 4 + TSS region transcription start site region 46319
Tssr46320 5 57919815 to 57919826 11 + TSS region transcription start site region 46320
Tssr46321 5 57919875 to 57919888 13 + TSS region transcription start site region 46321
Tssr46322 5 57919901 to 57919912 11 + TSS region transcription start site region 46322
Tssr46323 5 57920224 to 57920237 13 + TSS region transcription start site region 46323
Tssr46324 5 57920240 to 57920255 15 + TSS region transcription start site region 46324
Tssr46325 5 57920306 to 57920327 21 + TSS region transcription start site region 46325
Gm42479 5 57925620 to 57926975 1355 + unclassified gene predicted gene 42479
Tssr46326 5 57928312 to 57928357 45 + TSS region transcription start site region 46326
Gm42478 5 57929750 to 57931216 1466 + unclassified gene predicted gene 42478
Tssr46327 5 57937030 to 57937050 20 + TSS region transcription start site region 46327
Gm42639 5 57945042 to 57946912 1870 + unclassified gene predicted gene 42639
Tssr46328 5 57947940 to 57947961 21 + TSS region transcription start site region 46328
Tssr46329 5 57948001 to 57948013 12 + TSS region transcription start site region 46329
Tssr46330 5 57959117 to 57959121 4 + TSS region transcription start site region 46330
Gm42640 5 57961594 to 57962788 1194 + unclassified gene predicted gene 42640
Tssr46331 5 57963596 to 57963638 42 + TSS region transcription start site region 46331
Tssr46332 5 57965189 to 57965196 7 + TSS region transcription start site region 46332
Gm42484 5 57965414 to 57967517 2103 + unclassified gene predicted gene 42484
Tssr46333 5 57978030 to 57978058 28 + TSS region transcription start site region 46333
Gm37720 5 57984212 to 57985452 1240 + sense intronic lncRNA gene predicted gene, 37720
Tssr46334 5 57988018 to 57988041 23 + TSS region transcription start site region 46334
Tssr46335 5 58002724 to 58002736 12 + TSS region transcription start site region 46335
Tssr46336 5 58004881 to 58004895 14 + TSS region transcription start site region 46336
Tssr46337 5 58014606 to 58014626 20 + TSS region transcription start site region 46337
D5Mit1003 5 58030054 to 58030191 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1003
Tssr46338 5 58030147 to 58030153 6 + TSS region transcription start site region 46338
Tssr46339 5 58035387 to 58035391 4 + TSS region transcription start site region 46339
Tssr46340 5 58042781 to 58042811 30 + TSS region transcription start site region 46340
Tssr46341 5 58044365 to 58044383 18 + TSS region transcription start site region 46341
Gm42483 5 58047331 to 58049072 1741 + unclassified gene predicted gene 42483
Tssr46342 5 58059478 to 58059504 26 + TSS region transcription start site region 46342
Tssr46343 5 58109467 to 58109476 9 + TSS region transcription start site region 46343
Bmd2 5 100307666 to 55230992 -45076674 QTL bone mineral density 2
Rgcs1 5 108614761 to 55230992 -53383769 QTL retinal ganglion cell susceptible 1
Tmc1m4 5 126924008 to 54342835 -72581173 QTL Tmc1 modifier 4