Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:53615635-54475648

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmtb10 5 21895825 to 54342976 32447151 QTL hemostasis and thrombosis 10
Rbpj 5 53466152 to 53657362 191210 + protein coding gene recombination signal binding protein for immunoglobulin kappa J region
Tssr46256 5 53629967 to 53629974 7 + TSS region transcription start site region 46256
Tssr46257 5 53634076 to 53634080 4 + TSS region transcription start site region 46257
Tssr46258 5 53635432 to 53635435 3 + TSS region transcription start site region 46258
Tssr46259 5 53647139 to 53647152 13 + TSS region transcription start site region 46259
Tssr46260 5 53651475 to 53651490 15 + TSS region transcription start site region 46260
Tssr51030 5 53671440 to 53671447 7 - TSS region transcription start site region 51030
Tssr46261 5 53671862 to 53671873 11 + TSS region transcription start site region 46261
Tssr46262 5 53677121 to 53677125 4 + TSS region transcription start site region 46262
Cckar 5 53698485 to 53707767 9282 - protein coding gene cholecystokinin A receptor
Tssr51031 5 53706513 to 53706525 12 - TSS region transcription start site region 51031
Tssr51032 5 53707312 to 53707328 16 - TSS region transcription start site region 51032
Tssr51033 5 53707508 to 53707519 11 - TSS region transcription start site region 51033
Tssr51034 5 53707532 to 53707590 58 - TSS region transcription start site region 51034
Cpgi15870 5 53809514 to 53809850 336 CpG island CpG island 15870
Tbc1d19 5 53809606 to 53903965 94359 + protein coding gene TBC1 domain family, member 19
Tssr46263 5 53809613 to 53809629 16 + TSS region transcription start site region 46263
Tssr46264 5 53809632 to 53809683 51 + TSS region transcription start site region 46264
Gm43268 5 53905164 to 53909218 4054 + unclassified gene predicted gene 43268
Gm43266 5 53918444 to 53920214 1770 + unclassified gene predicted gene 43266
Gm40305 5 53927581 to 53950993 23412 + lncRNA gene predicted gene, 40305
Gm30601 5 53995215 to 53996613 1398 + lncRNA gene predicted gene, 30601
Cpgi15871 5 53995262 to 53995782 520 CpG island CpG island 15871
Cpgi15872 5 53998062 to 53999542 1480 CpG island CpG island 15872
Tssr46265 5 53998374 to 53998442 68 + TSS region transcription start site region 46265
Tssr46266 5 53998472 to 53998488 16 + TSS region transcription start site region 46266
Stim2 5 53998499 to 54121057 122558 + protein coding gene stromal interaction molecule 2
Tssr46267 5 53998551 to 53998575 24 + TSS region transcription start site region 46267
Tssr46268 5 53998664 to 53998680 16 + TSS region transcription start site region 46268
Tssr46269 5 53998695 to 53998707 12 + TSS region transcription start site region 46269
Tssr51035 5 53999491 to 53999502 11 - TSS region transcription start site region 51035
Tssr51036 5 54018629 to 54018632 3 - TSS region transcription start site region 51036
Tssr51037 5 54045635 to 54045648 13 - TSS region transcription start site region 51037
Tssr46270 5 54045826 to 54045830 4 + TSS region transcription start site region 46270
Tssr46271 5 54045908 to 54045921 13 + TSS region transcription start site region 46271
Tssr46272 5 54047511 to 54047524 13 + TSS region transcription start site region 46272
Tssr46273 5 54050215 to 54050223 8 + TSS region transcription start site region 46273
Tssr46274 5 54053906 to 54053913 7 + TSS region transcription start site region 46274
Tssr46275 5 54053931 to 54053944 13 + TSS region transcription start site region 46275
Gm15820 5 54094003 to 54095080 1077 - pseudogene predicted gene 15820
D5Mit133 5 54253768 to 54253917 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 133
Lfnq1 5 54253768 to 64422305 10168537 QTL lung function QTL 1
D5Mit395 5 54328256 to 54328380 124 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 395
D5Mit395.1 5 54328352 to 54328475 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 395.1
D5Mit394 5 54342835 to 54342976 141 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 394
Gm10440 5 54349992 to 54358542 8550 + lincRNA gene predicted gene 10440
Tssr46276 5 54377542 to 54377550 8 + TSS region transcription start site region 46276
Tssr46277 5 54377556 to 54377566 10 + TSS region transcription start site region 46277
Tmc1m4 5 126924008 to 54342835 -72581173 QTL Tmc1 modifier 4