MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:53189544-53296909

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Sel1l3	5	53107083 to 53213452	106369	-	protein coding gene	sel-1 suppressor of lin-12-like 3 (C. elegans)
Cpgi15866	5	53212481 to 53214214	1733		CpG island	CpG island 15866
Tssr51012	5	53213268 to 53213290	22	-	TSS region	transcription start site region 51012
Tssr51013	5	53213297 to 53213349	52	-	TSS region	transcription start site region 51013
Tssr51014	5	53213418 to 53213444	26	-	TSS region	transcription start site region 51014
Tssr51015	5	53213447 to 53213473	26	-	TSS region	transcription start site region 51015
Gm30464	5	53220959 to 53238504	17545	+	lncRNA gene	predicted gene, 30464
Gm30519	5	53239544 to 53246909	7365	-	lncRNA gene	predicted gene, 30519
Tssr51016	5	53246900 to 53246911	11	-	TSS region	transcription start site region 51016
Gm40303	5	53264177 to 53267019	2842	-	lncRNA gene	predicted gene, 40303
Cpgi15867	5	53266885 to 53267529	644		CpG island	CpG island 15867
Tssr46209	5	53267103 to 53267127	24	+	TSS region	transcription start site region 46209
Smim20	5	53267106 to 53278540	11434	+	protein coding gene	small integral membrane protein 20
Tssr46210	5	53267130 to 53267189	59	+	TSS region	transcription start site region 46210
Hrvhf1	5	53276081 to 53276081	0		QTL	heart rate variability, high frequency 1
Gm45495	5	53281810 to 53283509	1699	+	lincRNA gene	predicted gene 45495
D5Mit132	5	53289932 to 53290073	141		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 132
D5Mit132.2	5	53290051 to 53290177	126		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 132.2