Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:53077103-53457127

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D5Jpk3 5 53077429 to 53077524 95 DNA segment DNA segment, Chr 5, Japan, Kominami 3
Sel1l3 5 53107083 to 53213452 106369 - protein coding gene sel-1 suppressor of lin-12-like 3 (C. elegans)
n-R5s171 5 53143160 to 53143238 78 + rRNA gene nuclear encoded rRNA 5S 171
Tssr51011 5 53152874 to 53152877 3 - TSS region transcription start site region 51011
Cpgi15866 5 53212481 to 53214214 1733 CpG island CpG island 15866
Tssr51012 5 53213268 to 53213290 22 - TSS region transcription start site region 51012
Tssr51013 5 53213297 to 53213349 52 - TSS region transcription start site region 51013
Tssr51014 5 53213418 to 53213444 26 - TSS region transcription start site region 51014
Tssr51015 5 53213447 to 53213473 26 - TSS region transcription start site region 51015
Gm30464 5 53220959 to 53238504 17545 + lncRNA gene predicted gene, 30464
Gm30519 5 53239544 to 53246909 7365 - lncRNA gene predicted gene, 30519
Tssr51016 5 53246900 to 53246911 11 - TSS region transcription start site region 51016
Gm40303 5 53264177 to 53267019 2842 - lncRNA gene predicted gene, 40303
Cpgi15867 5 53266885 to 53267529 644 CpG island CpG island 15867
Tssr46209 5 53267103 to 53267127 24 + TSS region transcription start site region 46209
Smim20 5 53267106 to 53278540 11434 + protein coding gene small integral membrane protein 20
Tssr46210 5 53267130 to 53267189 59 + TSS region transcription start site region 46210
Hrvhf1 5 53276081 to 53276081 0 QTL heart rate variability, high frequency 1
Gm45495 5 53281810 to 53283509 1699 + lincRNA gene predicted gene 45495
D5Mit132 5 53289932 to 53290073 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 132
D5Mit132.2 5 53290051 to 53290177 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 132.2
D5Mit183 5 53337144 to 53337256 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 183
Lith13 5 53337144 to 53337256 112 QTL lithogenic gene 13
n-R5s172 5 53346259 to 53346372 113 - rRNA gene nuclear encoded rRNA 5S 172
Gm42745 5 53360656 to 53371774 11118 - lincRNA gene predicted gene 42745
Tssr46211 5 53376027 to 53376030 3 + TSS region transcription start site region 46211
Tssr51017 5 53378660 to 53378670 10 - TSS region transcription start site region 51017
Tssr46212 5 53378918 to 53378933 15 + TSS region transcription start site region 46212
Tssr51018 5 53385488 to 53385538 50 - TSS region transcription start site region 51018
Tssr46213 5 53388949 to 53388955 6 + TSS region transcription start site region 46213
Tssr46214 5 53414149 to 53414155 6 + TSS region transcription start site region 46214
Gm26486 5 53418573 to 53418682 109 + rRNA gene predicted gene, 26486
Tssr46215 5 53421049 to 53421096 47 + TSS region transcription start site region 46215
Tssr51019 5 53421293 to 53421330 37 - TSS region transcription start site region 51019
Tssr51020 5 53421356 to 53421370 14 - TSS region transcription start site region 51020