Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:5299040-5659060

Filter by:
52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdk14 5 4803384 to 5380251 576867 - protein coding gene cyclin-dependent kinase 14
Gm43727 5 5304356 to 5307002 2646 - sense intronic lncRNA gene predicted gene 43727
Gm43728 5 5309002 to 5311623 2621 - sense intronic lncRNA gene predicted gene 43728
Tssr50034 5 5314581 to 5314592 11 - TSS region transcription start site region 50034
Tssr50035 5 5314593 to 5314603 10 - TSS region transcription start site region 50035
Tssr50036 5 5314611 to 5314624 13 - TSS region transcription start site region 50036
D5Mit344 5 5319806 to 5319918 112 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 344
Tssr50037 5 5328144 to 5328181 37 - TSS region transcription start site region 50037
Tssr50038 5 5346610 to 5346628 18 - TSS region transcription start site region 50038
Tssr50039 5 5353794 to 5353797 3 - TSS region transcription start site region 50039
Tssr50040 5 5365826 to 5365827 1 - TSS region transcription start site region 50040
Tssr50041 5 5367130 to 5367154 24 - TSS region transcription start site region 50041
Gm30151 5 5368774 to 5373325 4551 + lncRNA gene predicted gene, 30151
Tssr50042 5 5374766 to 5374780 14 - TSS region transcription start site region 50042
Cpgi15518 5 5379694 to 5381089 1395 CpG island CpG island 15518
Tssr50043 5 5380136 to 5380141 5 - TSS region transcription start site region 50043
Tssr50044 5 5380154 to 5380169 15 - TSS region transcription start site region 50044
Tssr50045 5 5380185 to 5380229 44 - TSS region transcription start site region 50045
Tssr50046 5 5380545 to 5380556 11 - TSS region transcription start site region 50046
Tssr50047 5 5380607 to 5380682 75 - TSS region transcription start site region 50047
Gm30267 5 5380777 to 5383141 2364 + lncRNA gene predicted gene, 30267
Tssr45087 5 5420057 to 5420069 12 + TSS region transcription start site region 45087
Tssr50048 5 5420244 to 5420262 18 - TSS region transcription start site region 50048
Tssr1416 5 5420267 to 5420320 53 - TSS region transcription start site region 1416
Tssr45088 5 5421719 to 5421722 3 + TSS region transcription start site region 45088
1700015F17Rik 5 5437827 to 5479143 41316 - protein coding gene RIKEN cDNA 1700015F17 gene
Tssr50049 5 5479040 to 5479060 20 - TSS region transcription start site region 50049
Tssr50050 5 5479063 to 5479075 12 - TSS region transcription start site region 50050
Tssr50051 5 5479077 to 5479107 30 - TSS region transcription start site region 50051
Tssr50052 5 5479120 to 5479136 16 - TSS region transcription start site region 50052
Gm30325 5 5479160 to 5494070 14910 + lncRNA gene predicted gene, 30325
Tssr45089 5 5479177 to 5479189 12 + TSS region transcription start site region 45089
Tssr45090 5 5481551 to 5481554 3 + TSS region transcription start site region 45090
Tssr45091 5 5504816 to 5504824 8 + TSS region transcription start site region 45091
Cldn12 5 5505015 to 5514976 9961 - protein coding gene claudin 12
Cpgi15519 5 5508138 to 5508377 239 CpG island CpG island 15519
Cpgi15520 5 5514093 to 5515030 937 CpG island CpG island 15520
Tssr50053 5 5514808 to 5514830 22 - TSS region transcription start site region 50053
Tssr50054 5 5514836 to 5514858 22 - TSS region transcription start site region 50054
Tssr50055 5 5514877 to 5514891 14 - TSS region transcription start site region 50055
Tssr50056 5 5514906 to 5514918 12 - TSS region transcription start site region 50056
Gtpbp10 5 5537454 to 5559538 22084 - protein coding gene GTP-binding protein 10 (putative)
Cpgi15521 5 5559176 to 5559804 628 CpG island CpG island 15521
Tssr50057 5 5559501 to 5559517 16 - TSS region transcription start site region 50057
Tssr50058 5 5559521 to 5559545 24 - TSS region transcription start site region 50058
Gm30652 5 5567328 to 5567757 429 + pseudogene predicted gene, 30652
Gm8773 5 5573799 to 5576203 2404 + lincRNA gene predicted gene 8773
Cpgi15522 5 5573814 to 5574328 514 CpG island CpG island 15522
Tssr45092 5 5573994 to 5574013 19 + TSS region transcription start site region 45092
Cfap69 5 5579278 to 5664239 84961 - protein coding gene cilia and flagella associated protein 69
n-TUtca1 5 5627681 to 5627751 70 + tRNA gene nuclear encoded tRNA selenocysteine 1 (anticodon TCA)
Tssr1417 5 5644794 to 5644795 1 + TSS region transcription start site region 1417