Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:52900959-53558504

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D5Mit171 5 52914983 to 52915117 134 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 171
Gm43664 5 52917619 to 52919209 1590 - pseudogene predicted gene 43664
Gm23532 5 52959351 to 52959462 111 - snoRNA gene predicted gene, 23532
5033403H07Rik 5 52973012 to 52992292 19280 - lncRNA gene RIKEN cDNA 5033403H07 gene
Tssr46195 5 52974888 to 52974892 4 + TSS region transcription start site region 46195
Gm30301 5 52982037 to 52995753 13716 + lincRNA gene predicted gene, 30301
Tssr51001 5 52992255 to 52992260 5 - TSS region transcription start site region 51001
Tssr51002 5 52992283 to 52992298 15 - TSS region transcription start site region 51002
Tssr51003 5 52992300 to 52992317 17 - TSS region transcription start site region 51003
Tssr51004 5 52992323 to 52992351 28 - TSS region transcription start site region 51004
Tssr51005 5 52992353 to 52992371 18 - TSS region transcription start site region 51005
Tssr51006 5 52994135 to 52994153 18 - TSS region transcription start site region 51006
Tssr51007 5 52994165 to 52994178 13 - TSS region transcription start site region 51007
Tssr51008 5 52994206 to 52994221 15 - TSS region transcription start site region 51008
Tssr51009 5 52994427 to 52994444 17 - TSS region transcription start site region 51009
Tssr46196 5 53003011 to 53003016 5 + TSS region transcription start site region 46196
Tssr51010 5 53009052 to 53009075 23 - TSS region transcription start site region 51010
Tssr46197 5 53038081 to 53038085 4 + TSS region transcription start site region 46197
Gm17182 5 53047742 to 53049187 1445 - antisense lncRNA gene predicted gene 17182
Cpgi15865 5 53048793 to 53049647 854 CpG island CpG island 15865
Tssr46198 5 53049121 to 53049136 15 + TSS region transcription start site region 46198
Tssr46199 5 53049146 to 53049156 10 + TSS region transcription start site region 46199
Slc34a2 5 53049203 to 53071664 22461 + protein coding gene solute carrier family 34 (sodium phosphate), member 2
Tssr46200 5 53049346 to 53049363 17 + TSS region transcription start site region 46200
Tssr46201 5 53057725 to 53057733 8 + TSS region transcription start site region 46201
Tssr46202 5 53059174 to 53059189 15 + TSS region transcription start site region 46202
Tssr46203 5 53061367 to 53061378 11 + TSS region transcription start site region 46203
Tssr46204 5 53061397 to 53061408 11 + TSS region transcription start site region 46204
Tssr46205 5 53063845 to 53063856 11 + TSS region transcription start site region 46205
Tssr46206 5 53063914 to 53063924 10 + TSS region transcription start site region 46206
Tssr46207 5 53067691 to 53067702 11 + TSS region transcription start site region 46207
Tssr46208 5 53070013 to 53070027 14 + TSS region transcription start site region 46208
D5Jpk3 5 53077429 to 53077524 95 DNA segment DNA segment, Chr 5, Japan, Kominami 3
Sel1l3 5 53107083 to 53213452 106369 - protein coding gene sel-1 suppressor of lin-12-like 3 (C. elegans)
n-R5s171 5 53143160 to 53143238 78 + rRNA gene nuclear encoded rRNA 5S 171
Tssr51011 5 53152874 to 53152877 3 - TSS region transcription start site region 51011
Cpgi15866 5 53212481 to 53214214 1733 CpG island CpG island 15866
Tssr51012 5 53213268 to 53213290 22 - TSS region transcription start site region 51012
Tssr51013 5 53213297 to 53213349 52 - TSS region transcription start site region 51013
Tssr51014 5 53213418 to 53213444 26 - TSS region transcription start site region 51014
Tssr51015 5 53213447 to 53213473 26 - TSS region transcription start site region 51015
Gm30464 5 53220959 to 53238504 17545 + lncRNA gene predicted gene, 30464
Gm30519 5 53239544 to 53246909 7365 - lncRNA gene predicted gene, 30519
Tssr51016 5 53246900 to 53246911 11 - TSS region transcription start site region 51016
Gm40303 5 53264177 to 53267019 2842 - lncRNA gene predicted gene, 40303
Cpgi15867 5 53266885 to 53267529 644 CpG island CpG island 15867
Tssr46209 5 53267103 to 53267127 24 + TSS region transcription start site region 46209
Smim20 5 53267106 to 53278540 11434 + protein coding gene small integral membrane protein 20
Tssr46210 5 53267130 to 53267189 59 + TSS region transcription start site region 46210
Hrvhf1 5 53276081 to 53276081 0 QTL heart rate variability, high frequency 1
Gm45495 5 53281810 to 53283509 1699 + lincRNA gene predicted gene 45495
D5Mit132 5 53289932 to 53290073 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 132
D5Mit132.2 5 53290051 to 53290177 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 132.2
D5Mit183 5 53337144 to 53337256 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 183
Lith13 5 53337144 to 53337256 112 QTL lithogenic gene 13
n-R5s172 5 53346259 to 53346372 113 - rRNA gene nuclear encoded rRNA 5S 172
Gm42745 5 53360656 to 53371774 11118 - lincRNA gene predicted gene 42745
Tssr46211 5 53376027 to 53376030 3 + TSS region transcription start site region 46211
Tssr51017 5 53378660 to 53378670 10 - TSS region transcription start site region 51017
Tssr46212 5 53378918 to 53378933 15 + TSS region transcription start site region 46212
Tssr51018 5 53385488 to 53385538 50 - TSS region transcription start site region 51018
Tssr46213 5 53388949 to 53388955 6 + TSS region transcription start site region 46213
Tssr46214 5 53414149 to 53414155 6 + TSS region transcription start site region 46214
Gm26486 5 53418573 to 53418682 109 + rRNA gene predicted gene, 26486
Tssr46215 5 53421049 to 53421096 47 + TSS region transcription start site region 46215
Tssr51019 5 53421293 to 53421330 37 - TSS region transcription start site region 51019
Tssr51020 5 53421356 to 53421370 14 - TSS region transcription start site region 51020
Tssr46216 5 53466076 to 53466110 34 + TSS region transcription start site region 46216
Tssr46217 5 53466116 to 53466131 15 + TSS region transcription start site region 46217
Rbpj 5 53466152 to 53657362 191210 + protein coding gene recombination signal binding protein for immunoglobulin kappa J region
Tssr1481 5 53469725 to 53469772 47 + TSS region transcription start site region 1481
Tssr46218 5 53471308 to 53471352 44 + TSS region transcription start site region 46218
Tssr51021 5 53505504 to 53505523 19 - TSS region transcription start site region 51021
Tssr51022 5 53510573 to 53510604 31 - TSS region transcription start site region 51022
Gm10441 5 53519260 to 53522731 3471 - antisense lncRNA gene predicted gene 10441
Cpgi15868 5 53525748 to 53526021 273 CpG island CpG island 15868
Tssr46219 5 53532274 to 53532287 13 + TSS region transcription start site region 46219
Tssr46220 5 53532302 to 53532309 7 + TSS region transcription start site region 46220
Tssr46221 5 53532320 to 53532329 9 + TSS region transcription start site region 46221
Gm40304 5 53546181 to 53547114 933 - antisense lncRNA gene predicted gene, 40304
Tssr46222 5 53555773 to 53555784 11 + TSS region transcription start site region 46222
Tssr46223 5 53555795 to 53555819 24 + TSS region transcription start site region 46223