Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:52654145-54554174

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205 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmtb10 5 21895825 to 54342976 32447151 QTL hemostasis and thrombosis 10
Sepsecs 5 52643407 to 52669771 26364 - protein coding gene Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Cpgi15860 5 52669269 to 52670006 737 CpG island CpG island 15860
Tssr50997 5 52669458 to 52669477 19 - TSS region transcription start site region 50997
Tssr50998 5 52669677 to 52669728 51 - TSS region transcription start site region 50998
Tssr50999 5 52669732 to 52669743 11 - TSS region transcription start site region 50999
D5Mit233 5 52697226 to 52697372 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 233
Ahl10 5 52697226 to 52697372 146 QTL age related hearing loss, early onset 10
Hdlq7 5 52697226 to 52697372 146 QTL HDL QTL 7
Tssr51000 5 52712794 to 52712808 14 - TSS region transcription start site region 51000
Tssr46180 5 52719854 to 52719856 2 + TSS region transcription start site region 46180
Cpgi15861 5 52741362 to 52742368 1006 CpG island CpG island 15861
Tssr46181 5 52741569 to 52741623 54 + TSS region transcription start site region 46181
Pi4k2b 5 52741574 to 52769340 27766 + protein coding gene phosphatidylinositol 4-kinase type 2 beta
Tssr46182 5 52741628 to 52741651 23 + TSS region transcription start site region 46182
Tssr46183 5 52741666 to 52741677 11 + TSS region transcription start site region 46183
Tssr46184 5 52742610 to 52742624 14 + TSS region transcription start site region 46184
Zcchc4 5 52775409 to 52824665 49256 + protein coding gene zinc finger, CCHC domain containing 4
Cpgi15862 5 52782939 to 52783360 421 CpG island CpG island 15862
Tssr46185 5 52783058 to 52783091 33 + TSS region transcription start site region 46185
Tssr46186 5 52784265 to 52784267 2 + TSS region transcription start site region 46186
Tssr46187 5 52787145 to 52787152 7 + TSS region transcription start site region 46187
Tssr46188 5 52807134 to 52807140 6 + TSS region transcription start site region 46188
Tssr46189 5 52810215 to 52810220 5 + TSS region transcription start site region 46189
Cpgi15863 5 52833666 to 52834493 827 CpG island CpG island 15863
Tssr46190 5 52834009 to 52834031 22 + TSS region transcription start site region 46190
Tssr46191 5 52834045 to 52834112 67 + TSS region transcription start site region 46191
Tssr46192 5 52834114 to 52834167 53 + TSS region transcription start site region 46192
Anapc4 5 52834135 to 52866734 32599 + protein coding gene anaphase promoting complex subunit 4
Tssr46193 5 52834168 to 52834183 15 + TSS region transcription start site region 46193
Tssr46194 5 52834184 to 52834214 30 + TSS region transcription start site region 46194
Gm30241 5 52884817 to 52886776 1959 + lncRNA gene predicted gene, 30241
Cpgi15864 5 52888003 to 52888184 181 CpG island CpG island 15864
D5Mit171 5 52914983 to 52915117 134 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 171
Gm43664 5 52917619 to 52919209 1590 - pseudogene predicted gene 43664
Gm23532 5 52959351 to 52959462 111 - snoRNA gene predicted gene, 23532
5033403H07Rik 5 52973012 to 52992292 19280 - lncRNA gene RIKEN cDNA 5033403H07 gene
Tssr46195 5 52974888 to 52974892 4 + TSS region transcription start site region 46195
Gm30301 5 52982037 to 52995753 13716 + lincRNA gene predicted gene, 30301
Tssr51001 5 52992255 to 52992260 5 - TSS region transcription start site region 51001
Tssr51002 5 52992283 to 52992298 15 - TSS region transcription start site region 51002
Tssr51003 5 52992300 to 52992317 17 - TSS region transcription start site region 51003
Tssr51004 5 52992323 to 52992351 28 - TSS region transcription start site region 51004
Tssr51005 5 52992353 to 52992371 18 - TSS region transcription start site region 51005
Tssr51006 5 52994135 to 52994153 18 - TSS region transcription start site region 51006
Tssr51007 5 52994165 to 52994178 13 - TSS region transcription start site region 51007
Tssr51008 5 52994206 to 52994221 15 - TSS region transcription start site region 51008
Tssr51009 5 52994427 to 52994444 17 - TSS region transcription start site region 51009
Tssr46196 5 53003011 to 53003016 5 + TSS region transcription start site region 46196
Tssr51010 5 53009052 to 53009075 23 - TSS region transcription start site region 51010
Tssr46197 5 53038081 to 53038085 4 + TSS region transcription start site region 46197
Gm17182 5 53047742 to 53049187 1445 - antisense lncRNA gene predicted gene 17182
Cpgi15865 5 53048793 to 53049647 854 CpG island CpG island 15865
Tssr46198 5 53049121 to 53049136 15 + TSS region transcription start site region 46198
Tssr46199 5 53049146 to 53049156 10 + TSS region transcription start site region 46199
Slc34a2 5 53049203 to 53071664 22461 + protein coding gene solute carrier family 34 (sodium phosphate), member 2
Tssr46200 5 53049346 to 53049363 17 + TSS region transcription start site region 46200
Tssr46201 5 53057725 to 53057733 8 + TSS region transcription start site region 46201
Tssr46202 5 53059174 to 53059189 15 + TSS region transcription start site region 46202
Tssr46203 5 53061367 to 53061378 11 + TSS region transcription start site region 46203
Tssr46204 5 53061397 to 53061408 11 + TSS region transcription start site region 46204
Tssr46205 5 53063845 to 53063856 11 + TSS region transcription start site region 46205
Tssr46206 5 53063914 to 53063924 10 + TSS region transcription start site region 46206
Tssr46207 5 53067691 to 53067702 11 + TSS region transcription start site region 46207
Tssr46208 5 53070013 to 53070027 14 + TSS region transcription start site region 46208
D5Jpk3 5 53077429 to 53077524 95 DNA segment DNA segment, Chr 5, Japan, Kominami 3
Sel1l3 5 53107083 to 53213452 106369 - protein coding gene sel-1 suppressor of lin-12-like 3 (C. elegans)
n-R5s171 5 53143160 to 53143238 78 + rRNA gene nuclear encoded rRNA 5S 171
Tssr51011 5 53152874 to 53152877 3 - TSS region transcription start site region 51011
Cpgi15866 5 53212481 to 53214214 1733 CpG island CpG island 15866
Tssr51012 5 53213268 to 53213290 22 - TSS region transcription start site region 51012
Tssr51013 5 53213297 to 53213349 52 - TSS region transcription start site region 51013
Tssr51014 5 53213418 to 53213444 26 - TSS region transcription start site region 51014
Tssr51015 5 53213447 to 53213473 26 - TSS region transcription start site region 51015
Gm30464 5 53220959 to 53238504 17545 + lncRNA gene predicted gene, 30464
Gm30519 5 53239544 to 53246909 7365 - lncRNA gene predicted gene, 30519
Tssr51016 5 53246900 to 53246911 11 - TSS region transcription start site region 51016
Gm40303 5 53264177 to 53267019 2842 - lncRNA gene predicted gene, 40303
Cpgi15867 5 53266885 to 53267529 644 CpG island CpG island 15867
Tssr46209 5 53267103 to 53267127 24 + TSS region transcription start site region 46209
Smim20 5 53267106 to 53278540 11434 + protein coding gene small integral membrane protein 20
Tssr46210 5 53267130 to 53267189 59 + TSS region transcription start site region 46210
Hrvhf1 5 53276081 to 53276081 0 QTL heart rate variability, high frequency 1
Gm45495 5 53281810 to 53283509 1699 + lincRNA gene predicted gene 45495
D5Mit132 5 53289932 to 53290073 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 132
D5Mit132.2 5 53290051 to 53290177 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 132.2
D5Mit183 5 53337144 to 53337256 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 183
Lith13 5 53337144 to 53337256 112 QTL lithogenic gene 13
n-R5s172 5 53346259 to 53346372 113 - rRNA gene nuclear encoded rRNA 5S 172
Gm42745 5 53360656 to 53371774 11118 - lincRNA gene predicted gene 42745
Tssr46211 5 53376027 to 53376030 3 + TSS region transcription start site region 46211
Tssr51017 5 53378660 to 53378670 10 - TSS region transcription start site region 51017
Tssr46212 5 53378918 to 53378933 15 + TSS region transcription start site region 46212
Tssr51018 5 53385488 to 53385538 50 - TSS region transcription start site region 51018
Tssr46213 5 53388949 to 53388955 6 + TSS region transcription start site region 46213
Tssr46214 5 53414149 to 53414155 6 + TSS region transcription start site region 46214
Gm26486 5 53418573 to 53418682 109 + rRNA gene predicted gene, 26486
Tssr46215 5 53421049 to 53421096 47 + TSS region transcription start site region 46215
Tssr51019 5 53421293 to 53421330 37 - TSS region transcription start site region 51019
Tssr51020 5 53421356 to 53421370 14 - TSS region transcription start site region 51020
Tssr46216 5 53466076 to 53466110 34 + TSS region transcription start site region 46216
Tssr46217 5 53466116 to 53466131 15 + TSS region transcription start site region 46217
Rbpj 5 53466152 to 53657362 191210 + protein coding gene recombination signal binding protein for immunoglobulin kappa J region
Tssr1481 5 53469725 to 53469772 47 + TSS region transcription start site region 1481
Tssr46218 5 53471308 to 53471352 44 + TSS region transcription start site region 46218
Tssr51021 5 53505504 to 53505523 19 - TSS region transcription start site region 51021
Tssr51022 5 53510573 to 53510604 31 - TSS region transcription start site region 51022
Gm10441 5 53519260 to 53522731 3471 - antisense lncRNA gene predicted gene 10441
Cpgi15868 5 53525748 to 53526021 273 CpG island CpG island 15868
Tssr46219 5 53532274 to 53532287 13 + TSS region transcription start site region 46219
Tssr46220 5 53532302 to 53532309 7 + TSS region transcription start site region 46220
Tssr46221 5 53532320 to 53532329 9 + TSS region transcription start site region 46221
Gm40304 5 53546181 to 53547114 933 - antisense lncRNA gene predicted gene, 40304
Tssr46222 5 53555773 to 53555784 11 + TSS region transcription start site region 46222
Tssr46223 5 53555795 to 53555819 24 + TSS region transcription start site region 46223
Cpgi15869 5 53588536 to 53591508 2972 CpG island CpG island 15869
Tssr46224 5 53588752 to 53588767 15 + TSS region transcription start site region 46224
Tssr46225 5 53588960 to 53588965 5 + TSS region transcription start site region 46225
Tssr51023 5 53589254 to 53589265 11 - TSS region transcription start site region 51023
Tssr46226 5 53589429 to 53589444 15 + TSS region transcription start site region 46226
Tssr51024 5 53590178 to 53590192 14 - TSS region transcription start site region 51024
Tssr46227 5 53590339 to 53590351 12 + TSS region transcription start site region 46227
Tssr46228 5 53590353 to 53590377 24 + TSS region transcription start site region 46228
Tssr46229 5 53590422 to 53590433 11 + TSS region transcription start site region 46229
Tssr46230 5 53590453 to 53590529 76 + TSS region transcription start site region 46230
Tssr51025 5 53590572 to 53590589 17 - TSS region transcription start site region 51025
Tssr46231 5 53590656 to 53590668 12 + TSS region transcription start site region 46231
Tssr46232 5 53590673 to 53590703 30 + TSS region transcription start site region 46232
Tssr46233 5 53590721 to 53590722 1 + TSS region transcription start site region 46233
Tssr46234 5 53591059 to 53591066 7 + TSS region transcription start site region 46234
Tssr46235 5 53591233 to 53591242 9 + TSS region transcription start site region 46235
Tssr46236 5 53591248 to 53591260 12 + TSS region transcription start site region 46236
Tssr46237 5 53591400 to 53591407 7 + TSS region transcription start site region 46237
Tssr46238 5 53591466 to 53591478 12 + TSS region transcription start site region 46238
Tssr46239 5 53591529 to 53591540 11 + TSS region transcription start site region 46239
Tssr46240 5 53591596 to 53591607 11 + TSS region transcription start site region 46240
Tssr46241 5 53591917 to 53591965 48 + TSS region transcription start site region 46241
Tssr51026 5 53594230 to 53594241 11 - TSS region transcription start site region 51026
Tssr51027 5 53594300 to 53594311 11 - TSS region transcription start site region 51027
Tssr51028 5 53594321 to 53594334 13 - TSS region transcription start site region 51028
Tssr51029 5 53594343 to 53594354 11 - TSS region transcription start site region 51029
Tssr46242 5 53594996 to 53595007 11 + TSS region transcription start site region 46242
Tssr46243 5 53596116 to 53596133 17 + TSS region transcription start site region 46243
Tssr46244 5 53601769 to 53601783 14 + TSS region transcription start site region 46244
Tssr46245 5 53602402 to 53602438 36 + TSS region transcription start site region 46245
Tssr46246 5 53602539 to 53602556 17 + TSS region transcription start site region 46246
Tssr46247 5 53603961 to 53603976 15 + TSS region transcription start site region 46247
Tssr46248 5 53604036 to 53604047 11 + TSS region transcription start site region 46248
Tssr46249 5 53604117 to 53604137 20 + TSS region transcription start site region 46249
Tssr46250 5 53604145 to 53604174 29 + TSS region transcription start site region 46250
Tssr46251 5 53604182 to 53604209 27 + TSS region transcription start site region 46251
Tssr46252 5 53604341 to 53604386 45 + TSS region transcription start site region 46252
Tssr46253 5 53606911 to 53606942 31 + TSS region transcription start site region 46253
Tssr46254 5 53609214 to 53609242 28 + TSS region transcription start site region 46254
Tssr46255 5 53614978 to 53614991 13 + TSS region transcription start site region 46255
Tssr46256 5 53629967 to 53629974 7 + TSS region transcription start site region 46256
Tssr46257 5 53634076 to 53634080 4 + TSS region transcription start site region 46257
Tssr46258 5 53635432 to 53635435 3 + TSS region transcription start site region 46258
Tssr46259 5 53647139 to 53647152 13 + TSS region transcription start site region 46259
Tssr46260 5 53651475 to 53651490 15 + TSS region transcription start site region 46260
Tssr51030 5 53671440 to 53671447 7 - TSS region transcription start site region 51030
Tssr46261 5 53671862 to 53671873 11 + TSS region transcription start site region 46261
Tssr46262 5 53677121 to 53677125 4 + TSS region transcription start site region 46262
Cckar 5 53698485 to 53707767 9282 - protein coding gene cholecystokinin A receptor
Tssr51031 5 53706513 to 53706525 12 - TSS region transcription start site region 51031
Tssr51032 5 53707312 to 53707328 16 - TSS region transcription start site region 51032
Tssr51033 5 53707508 to 53707519 11 - TSS region transcription start site region 51033
Tssr51034 5 53707532 to 53707590 58 - TSS region transcription start site region 51034
Cpgi15870 5 53809514 to 53809850 336 CpG island CpG island 15870
Tbc1d19 5 53809606 to 53903965 94359 + protein coding gene TBC1 domain family, member 19
Tssr46263 5 53809613 to 53809629 16 + TSS region transcription start site region 46263
Tssr46264 5 53809632 to 53809683 51 + TSS region transcription start site region 46264
Gm43268 5 53905164 to 53909218 4054 + unclassified gene predicted gene 43268
Gm43266 5 53918444 to 53920214 1770 + unclassified gene predicted gene 43266
Gm40305 5 53927581 to 53950993 23412 + lncRNA gene predicted gene, 40305
Gm30601 5 53995215 to 53996613 1398 + lncRNA gene predicted gene, 30601
Cpgi15871 5 53995262 to 53995782 520 CpG island CpG island 15871
Cpgi15872 5 53998062 to 53999542 1480 CpG island CpG island 15872
Tssr46265 5 53998374 to 53998442 68 + TSS region transcription start site region 46265
Tssr46266 5 53998472 to 53998488 16 + TSS region transcription start site region 46266
Stim2 5 53998499 to 54121057 122558 + protein coding gene stromal interaction molecule 2
Tssr46267 5 53998551 to 53998575 24 + TSS region transcription start site region 46267
Tssr46268 5 53998664 to 53998680 16 + TSS region transcription start site region 46268
Tssr46269 5 53998695 to 53998707 12 + TSS region transcription start site region 46269
Tssr51035 5 53999491 to 53999502 11 - TSS region transcription start site region 51035
Tssr51036 5 54018629 to 54018632 3 - TSS region transcription start site region 51036
Tssr51037 5 54045635 to 54045648 13 - TSS region transcription start site region 51037
Tssr46270 5 54045826 to 54045830 4 + TSS region transcription start site region 46270
Tssr46271 5 54045908 to 54045921 13 + TSS region transcription start site region 46271
Tssr46272 5 54047511 to 54047524 13 + TSS region transcription start site region 46272
Tssr46273 5 54050215 to 54050223 8 + TSS region transcription start site region 46273
Tssr46274 5 54053906 to 54053913 7 + TSS region transcription start site region 46274
Tssr46275 5 54053931 to 54053944 13 + TSS region transcription start site region 46275
Gm15820 5 54094003 to 54095080 1077 - pseudogene predicted gene 15820
D5Mit133 5 54253768 to 54253917 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 133
Lfnq1 5 54253768 to 64422305 10168537 QTL lung function QTL 1
D5Mit395 5 54328256 to 54328380 124 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 395
D5Mit395.1 5 54328352 to 54328475 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 395.1
D5Mit394 5 54342835 to 54342976 141 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 394
Gm10440 5 54349992 to 54358542 8550 + lincRNA gene predicted gene 10440