Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:52562226-52832372

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lgi2 5 52533517 to 52566306 32789 - protein coding gene leucine-rich repeat LGI family, member 2
Cpgi15858 5 52565402 to 52566545 1143 CpG island CpG island 15858
Tssr50993 5 52566190 to 52566218 28 - TSS region transcription start site region 50993
Tssr50994 5 52566220 to 52566262 42 - TSS region transcription start site region 50994
Tssr50995 5 52566264 to 52566312 48 - TSS region transcription start site region 50995
Tssr50996 5 52566358 to 52566390 32 - TSS region transcription start site region 50996
Tssr46179 5 52581352 to 52581367 15 + TSS region transcription start site region 46179
Gm5866 5 52582074 to 52583046 972 + pseudogene predicted gene 5866
8030423F21Rik 5 52607550 to 52619011 11461 - lincRNA gene RIKEN cDNA 8030423F21 gene
Cpgi15859 5 52618414 to 52618900 486 CpG island CpG island 15859
Gm30178 5 52622299 to 52623487 1188 - lncRNA gene predicted gene, 30178
Sepsecs 5 52643407 to 52669771 26364 - protein coding gene Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Cpgi15860 5 52669269 to 52670006 737 CpG island CpG island 15860
Tssr50997 5 52669458 to 52669477 19 - TSS region transcription start site region 50997
Tssr50998 5 52669677 to 52669728 51 - TSS region transcription start site region 50998
Tssr50999 5 52669732 to 52669743 11 - TSS region transcription start site region 50999
Hdlq7 5 52697226 to 52697372 146 QTL HDL QTL 7
D5Mit233 5 52697226 to 52697372 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 233
Ahl10 5 52697226 to 52697372 146 QTL age related hearing loss, early onset 10
Tssr51000 5 52712794 to 52712808 14 - TSS region transcription start site region 51000
Tssr46180 5 52719854 to 52719856 2 + TSS region transcription start site region 46180
Cpgi15861 5 52741362 to 52742368 1006 CpG island CpG island 15861
Tssr46181 5 52741569 to 52741623 54 + TSS region transcription start site region 46181
Pi4k2b 5 52741574 to 52769340 27766 + protein coding gene phosphatidylinositol 4-kinase type 2 beta
Tssr46182 5 52741628 to 52741651 23 + TSS region transcription start site region 46182
Tssr46183 5 52741666 to 52741677 11 + TSS region transcription start site region 46183
Tssr46184 5 52742610 to 52742624 14 + TSS region transcription start site region 46184
Zcchc4 5 52775409 to 52824665 49256 + protein coding gene zinc finger, CCHC domain containing 4
Cpgi15862 5 52782939 to 52783360 421 CpG island CpG island 15862
Tssr46185 5 52783058 to 52783091 33 + TSS region transcription start site region 46185
Tssr46186 5 52784265 to 52784267 2 + TSS region transcription start site region 46186
Tssr46187 5 52787145 to 52787152 7 + TSS region transcription start site region 46187
Tssr46188 5 52807134 to 52807140 6 + TSS region transcription start site region 46188
Tssr46189 5 52810215 to 52810220 5 + TSS region transcription start site region 46189