Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:52407906-52680344

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc149 5 52374651 to 52471521 96870 - protein coding gene coiled-coil domain containing 149
D5Dcr66 5 52416214 to 52416309 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 66
D5Mit52 5 52416644 to 52416787 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 52
Gm3519 5 52441159 to 52443252 2093 + antisense lncRNA gene predicted gene 3519
Cpgi15855 5 52470929 to 52471907 978 CpG island CpG island 15855
Tssr50991 5 52471534 to 52471589 55 - TSS region transcription start site region 50991
Cpgi15856 5 52476302 to 52476764 462 CpG island CpG island 15856
Cpgi15857 5 52516045 to 52516394 349 CpG island CpG island 15857
Lgi2 5 52533517 to 52566306 32789 - protein coding gene leucine-rich repeat LGI family, member 2
Lxw4 5 52537120 to 52537252 132 QTL lupus BXSB x NZW 4
D5Mit55 5 52537120 to 52537252 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 55
Lmr24b 5 52537120 to 52537252 132 QTL leishmaniasis resistance 24b
Lmr24c 5 52537120 to 52537252 132 QTL leishmaniasis resistance 24c
Lmr24e 5 52537120 to 52537252 132 QTL leishmaniasis resistance 24e
Gm43685 5 52538831 to 52540079 1248 + antisense lncRNA gene predicted gene 43685
Gm43686 5 52542906 to 52545344 2438 - unclassified gene predicted gene 43686
Tssr50992 5 52550892 to 52550897 5 - TSS region transcription start site region 50992
Cpgi15858 5 52565402 to 52566545 1143 CpG island CpG island 15858
Tssr50993 5 52566190 to 52566218 28 - TSS region transcription start site region 50993
Tssr50994 5 52566220 to 52566262 42 - TSS region transcription start site region 50994
Tssr50995 5 52566264 to 52566312 48 - TSS region transcription start site region 50995
Tssr50996 5 52566358 to 52566390 32 - TSS region transcription start site region 50996
Tssr46179 5 52581352 to 52581367 15 + TSS region transcription start site region 46179
Gm5866 5 52582074 to 52583046 972 + pseudogene predicted gene 5866
8030423F21Rik 5 52607550 to 52619011 11461 - lincRNA gene RIKEN cDNA 8030423F21 gene
Cpgi15859 5 52618414 to 52618900 486 CpG island CpG island 15859
Gm30178 5 52622299 to 52623487 1188 - lncRNA gene predicted gene, 30178
Sepsecs 5 52643407 to 52669771 26364 - protein coding gene Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Cpgi15860 5 52669269 to 52670006 737 CpG island CpG island 15860
Tssr50997 5 52669458 to 52669477 19 - TSS region transcription start site region 50997
Tssr50998 5 52669677 to 52669728 51 - TSS region transcription start site region 50998
Tssr50999 5 52669732 to 52669743 11 - TSS region transcription start site region 50999
Lmr24 5 107173175 to 52537120 -54636055 QTL leishmaniasis resistance 24
Lmr24a 5 107173175 to 52537120 -54636055 QTL leishmaniasis resistance 24a