MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:52303118-52383222

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm43179	5	52342086 to 52342360	274	-	lincRNA gene	predicted gene 43179
Gm25601	5	52343118 to 52343222	104	-	snRNA gene	predicted gene, 25601
Sod3	5	52363804 to 52369738	5934	+	protein coding gene	superoxide dismutase 3, extracellular
Tssr46168	5	52363912 to 52363923	11	+	TSS region	transcription start site region 46168
Tssr46169	5	52363925 to 52363955	30	+	TSS region	transcription start site region 46169
Tssr46170	5	52363956 to 52363980	24	+	TSS region	transcription start site region 46170
D5Dcr65	5	52366647 to 52366742	95		DNA segment	DNA Segment, Chr 5, Derry C. Roopenian 65
Cpgi15854	5	52368104 to 52368938	834		CpG island	CpG island 15854
Tssr46171	5	52368452 to 52368464	12	+	TSS region	transcription start site region 46171
Tssr46172	5	52368471 to 52368517	46	+	TSS region	transcription start site region 46172
Tssr46173	5	52368549 to 52368577	28	+	TSS region	transcription start site region 46173
Tssr46174	5	52368749 to 52368756	7	+	TSS region	transcription start site region 46174
Tssr46175	5	52368777 to 52368789	12	+	TSS region	transcription start site region 46175
Tssr46176	5	52368791 to 52368808	17	+	TSS region	transcription start site region 46176
Tssr46177	5	52368819 to 52368845	26	+	TSS region	transcription start site region 46177
Tssr46178	5	52369092 to 52369115	23	+	TSS region	transcription start site region 46178
Tssr50990	5	52369200 to 52369219	19	-	TSS region	transcription start site region 50990
Ccdc149	5	52374651 to 52471521	96870	-	protein coding gene	coiled-coil domain containing 149