Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:50961302-53991764

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287 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr46163 5 51040098 to 51040105 7 + TSS region transcription start site region 46163
D5Dcr60 5 51047743 to 51047838 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 60
Tssr46164 5 51052337 to 51052342 5 + TSS region transcription start site region 46164
Gm40319 5 51052381 to 51052861 480 + pseudogene predicted gene, 40319
D5Dcr61 5 51160804 to 51160899 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 61
Gm44377 5 51223588 to 51223674 86 - miRNA gene predicted gene, 44377
Gm29924 5 51283814 to 51289330 5516 - lncRNA gene predicted gene, 29924
D5Dcr62 5 51433103 to 51433198 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 62
Ppargc1a 5 51454250 to 51567726 113476 - protein coding gene peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
Tssr50960 5 51457745 to 51457757 12 - TSS region transcription start site region 50960
Tssr50961 5 51458075 to 51458100 25 - TSS region transcription start site region 50961
Tssr50962 5 51458117 to 51458135 18 - TSS region transcription start site region 50962
Tssr50963 5 51479280 to 51479304 24 - TSS region transcription start site region 50963
Gm42614 5 51482752 to 51484305 1553 - unclassified gene predicted gene 42614
Gm42615 5 51491097 to 51492916 1819 - unclassified gene predicted gene 42615
Tssr50964 5 51495726 to 51495741 15 - TSS region transcription start site region 50964
Tssr50965 5 51495798 to 51495809 11 - TSS region transcription start site region 50965
Tssr50966 5 51497305 to 51497311 6 - TSS region transcription start site region 50966
Gm42613 5 51499528 to 51501458 1930 + unclassified gene predicted gene 42613
Gm43605 5 51510868 to 51514293 3425 - unclassified gene predicted gene 43605
Tssr50967 5 51526310 to 51526314 4 - TSS region transcription start site region 50967
Tssr50968 5 51534526 to 51534529 3 - TSS region transcription start site region 50968
Tssr50969 5 51547569 to 51547573 4 - TSS region transcription start site region 50969
Tssr50970 5 51553862 to 51553888 26 - TSS region transcription start site region 50970
Tssr50971 5 51553896 to 51553905 9 - TSS region transcription start site region 50971
D5Dcr63 5 51557422 to 51557518 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 63
Tssr50972 5 51567143 to 51567148 5 - TSS region transcription start site region 50972
Tssr50973 5 51567717 to 51567732 15 - TSS region transcription start site region 50973
D5Dcr64 5 51572326 to 51572421 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 64
Tssr50974 5 51723577 to 51723579 2 - TSS region transcription start site region 50974
D5Mit298 5 51738465 to 51738587 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 298
Tssr50975 5 51772705 to 51772726 21 - TSS region transcription start site region 50975
Tssr50976 5 51797221 to 51797226 5 - TSS region transcription start site region 50976
Gm43606 5 51855220 to 51858775 3555 - unclassified gene predicted gene 43606
Cpgi15851 5 51868361 to 51868515 154 CpG island CpG island 15851
Tssr50977 5 51872101 to 51872104 3 - TSS region transcription start site region 50977
Gm42616 5 51875419 to 51879602 4183 - unclassified gene predicted gene 42616
Gm42617 5 51891986 to 51893214 1228 - unclassified gene predicted gene 42617
Gm43175 5 51907122 to 51910931 3809 - unclassified gene predicted gene 43175
Tssr50978 5 51910838 to 51910846 8 - TSS region transcription start site region 50978
Tssr50979 5 52015481 to 52015485 4 - TSS region transcription start site region 50979
Tssr50980 5 52034199 to 52034245 46 - TSS region transcription start site region 50980
Gm43174 5 52079888 to 52082332 2444 - unclassified gene predicted gene 43174
Cpgi15852 5 52112771 to 52116651 3880 CpG island CpG island 15852
Tssr50981 5 52115771 to 52115791 20 - TSS region transcription start site region 50981
Tssr50982 5 52115805 to 52115848 43 - TSS region transcription start site region 50982
Tssr50983 5 52115904 to 52115917 13 - TSS region transcription start site region 50983
Tssr50984 5 52115933 to 52115979 46 - TSS region transcription start site region 50984
Gm43177 5 52117312 to 52118523 1211 + lincRNA gene predicted gene 43177
Gm40302 5 52128818 to 52138873 10055 + lncRNA gene predicted gene, 40302
Mir6417 5 52135902 to 52136017 115 - miRNA gene microRNA 6417
Gm43176 5 52139585 to 52142573 2988 - unclassified gene predicted gene 43176
Dhx15 5 52150203 to 52190514 40311 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 15
Tssr50985 5 52154308 to 52154312 4 - TSS region transcription start site region 50985
Gm43178 5 52174370 to 52175755 1385 - unclassified gene predicted gene 43178
Tssr50986 5 52184603 to 52184615 12 - TSS region transcription start site region 50986
Cpgi15853 5 52189795 to 52190874 1079 CpG island CpG island 15853
Tssr46165 5 52189860 to 52189871 11 + TSS region transcription start site region 46165
Tssr50987 5 52190041 to 52190086 45 - TSS region transcription start site region 50987
Tssr50988 5 52190484 to 52190524 40 - TSS region transcription start site region 50988
Tssr1480 5 52190536 to 52190543 7 - TSS region transcription start site region 1480
Tssr46166 5 52190650 to 52190704 54 + TSS region transcription start site region 46166
9230114K14Rik 5 52190681 to 52197984 7303 + lncRNA gene RIKEN cDNA 9230114K14 gene
Tssr46167 5 52190719 to 52190728 9 + TSS region transcription start site region 46167
Tssr50989 5 52192184 to 52192205 21 - TSS region transcription start site region 50989
C130083M11Rik 5 52199984 to 52216433 16449 - lincRNA gene RIKEN cDNA C130083M11 gene
Gm43180 5 52239336 to 52242221 2885 + unclassified gene predicted gene 43180
Gm43179 5 52342086 to 52342360 274 - lincRNA gene predicted gene 43179
Gm25601 5 52343118 to 52343222 104 - snRNA gene predicted gene, 25601
Sod3 5 52363804 to 52369738 5934 + protein coding gene superoxide dismutase 3, extracellular
Tssr46168 5 52363912 to 52363923 11 + TSS region transcription start site region 46168
Tssr46169 5 52363925 to 52363955 30 + TSS region transcription start site region 46169
Tssr46170 5 52363956 to 52363980 24 + TSS region transcription start site region 46170
D5Dcr65 5 52366647 to 52366742 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 65
Cpgi15854 5 52368104 to 52368938 834 CpG island CpG island 15854
Tssr46171 5 52368452 to 52368464 12 + TSS region transcription start site region 46171
Tssr46172 5 52368471 to 52368517 46 + TSS region transcription start site region 46172
Tssr46173 5 52368549 to 52368577 28 + TSS region transcription start site region 46173
Tssr46174 5 52368749 to 52368756 7 + TSS region transcription start site region 46174
Tssr46175 5 52368777 to 52368789 12 + TSS region transcription start site region 46175
Tssr46176 5 52368791 to 52368808 17 + TSS region transcription start site region 46176
Tssr46177 5 52368819 to 52368845 26 + TSS region transcription start site region 46177
Tssr46178 5 52369092 to 52369115 23 + TSS region transcription start site region 46178
Tssr50990 5 52369200 to 52369219 19 - TSS region transcription start site region 50990
Ccdc149 5 52374651 to 52471521 96870 - protein coding gene coiled-coil domain containing 149
D5Dcr66 5 52416214 to 52416309 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 66
D5Mit52 5 52416644 to 52416787 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 52
Gm3519 5 52441159 to 52443252 2093 + antisense lncRNA gene predicted gene 3519
Cpgi15855 5 52470929 to 52471907 978 CpG island CpG island 15855
Tssr50991 5 52471534 to 52471589 55 - TSS region transcription start site region 50991
Cpgi15856 5 52476302 to 52476764 462 CpG island CpG island 15856
Cpgi15857 5 52516045 to 52516394 349 CpG island CpG island 15857
Lgi2 5 52533517 to 52566306 32789 - protein coding gene leucine-rich repeat LGI family, member 2
Lxw4 5 52537120 to 52537252 132 QTL lupus BXSB x NZW 4
Lmr24e 5 52537120 to 52537252 132 QTL leishmaniasis resistance 24e
Lmr24b 5 52537120 to 52537252 132 QTL leishmaniasis resistance 24b
D5Mit55 5 52537120 to 52537252 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 55
Lmr24c 5 52537120 to 52537252 132 QTL leishmaniasis resistance 24c
Gm43685 5 52538831 to 52540079 1248 + antisense lncRNA gene predicted gene 43685
Gm43686 5 52542906 to 52545344 2438 - unclassified gene predicted gene 43686
Tssr50992 5 52550892 to 52550897 5 - TSS region transcription start site region 50992
Cpgi15858 5 52565402 to 52566545 1143 CpG island CpG island 15858
Tssr50993 5 52566190 to 52566218 28 - TSS region transcription start site region 50993
Tssr50994 5 52566220 to 52566262 42 - TSS region transcription start site region 50994
Tssr50995 5 52566264 to 52566312 48 - TSS region transcription start site region 50995
Tssr50996 5 52566358 to 52566390 32 - TSS region transcription start site region 50996
Tssr46179 5 52581352 to 52581367 15 + TSS region transcription start site region 46179
Gm5866 5 52582074 to 52583046 972 + pseudogene predicted gene 5866
8030423F21Rik 5 52607550 to 52619011 11461 - lincRNA gene RIKEN cDNA 8030423F21 gene
Cpgi15859 5 52618414 to 52618900 486 CpG island CpG island 15859
Gm30178 5 52622299 to 52623487 1188 - lncRNA gene predicted gene, 30178
Sepsecs 5 52643407 to 52669771 26364 - protein coding gene Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Cpgi15860 5 52669269 to 52670006 737 CpG island CpG island 15860
Tssr50997 5 52669458 to 52669477 19 - TSS region transcription start site region 50997
Tssr50998 5 52669677 to 52669728 51 - TSS region transcription start site region 50998
Tssr50999 5 52669732 to 52669743 11 - TSS region transcription start site region 50999
Ahl10 5 52697226 to 52697372 146 QTL age related hearing loss, early onset 10
D5Mit233 5 52697226 to 52697372 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 233
Hdlq7 5 52697226 to 52697372 146 QTL HDL QTL 7
Tssr51000 5 52712794 to 52712808 14 - TSS region transcription start site region 51000
Tssr46180 5 52719854 to 52719856 2 + TSS region transcription start site region 46180
Cpgi15861 5 52741362 to 52742368 1006 CpG island CpG island 15861
Tssr46181 5 52741569 to 52741623 54 + TSS region transcription start site region 46181
Pi4k2b 5 52741574 to 52769340 27766 + protein coding gene phosphatidylinositol 4-kinase type 2 beta
Tssr46182 5 52741628 to 52741651 23 + TSS region transcription start site region 46182
Tssr46183 5 52741666 to 52741677 11 + TSS region transcription start site region 46183
Tssr46184 5 52742610 to 52742624 14 + TSS region transcription start site region 46184
Zcchc4 5 52775409 to 52824665 49256 + protein coding gene zinc finger, CCHC domain containing 4
Cpgi15862 5 52782939 to 52783360 421 CpG island CpG island 15862
Tssr46185 5 52783058 to 52783091 33 + TSS region transcription start site region 46185
Tssr46186 5 52784265 to 52784267 2 + TSS region transcription start site region 46186
Tssr46187 5 52787145 to 52787152 7 + TSS region transcription start site region 46187
Tssr46188 5 52807134 to 52807140 6 + TSS region transcription start site region 46188
Tssr46189 5 52810215 to 52810220 5 + TSS region transcription start site region 46189
Cpgi15863 5 52833666 to 52834493 827 CpG island CpG island 15863
Tssr46190 5 52834009 to 52834031 22 + TSS region transcription start site region 46190
Tssr46191 5 52834045 to 52834112 67 + TSS region transcription start site region 46191
Tssr46192 5 52834114 to 52834167 53 + TSS region transcription start site region 46192
Anapc4 5 52834135 to 52866734 32599 + protein coding gene anaphase promoting complex subunit 4
Tssr46193 5 52834168 to 52834183 15 + TSS region transcription start site region 46193
Tssr46194 5 52834184 to 52834214 30 + TSS region transcription start site region 46194
Gm30241 5 52884817 to 52886776 1959 + lncRNA gene predicted gene, 30241
Cpgi15864 5 52888003 to 52888184 181 CpG island CpG island 15864
D5Mit171 5 52914983 to 52915117 134 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 171
Gm43664 5 52917619 to 52919209 1590 - pseudogene predicted gene 43664
Gm23532 5 52959351 to 52959462 111 - snoRNA gene predicted gene, 23532
5033403H07Rik 5 52973012 to 52992292 19280 - lncRNA gene RIKEN cDNA 5033403H07 gene
Tssr46195 5 52974888 to 52974892 4 + TSS region transcription start site region 46195
Gm30301 5 52982037 to 52995753 13716 + lincRNA gene predicted gene, 30301
Tssr51001 5 52992255 to 52992260 5 - TSS region transcription start site region 51001
Tssr51002 5 52992283 to 52992298 15 - TSS region transcription start site region 51002
Tssr51003 5 52992300 to 52992317 17 - TSS region transcription start site region 51003
Tssr51004 5 52992323 to 52992351 28 - TSS region transcription start site region 51004
Tssr51005 5 52992353 to 52992371 18 - TSS region transcription start site region 51005
Tssr51006 5 52994135 to 52994153 18 - TSS region transcription start site region 51006
Tssr51007 5 52994165 to 52994178 13 - TSS region transcription start site region 51007
Tssr51008 5 52994206 to 52994221 15 - TSS region transcription start site region 51008
Tssr51009 5 52994427 to 52994444 17 - TSS region transcription start site region 51009
Tssr46196 5 53003011 to 53003016 5 + TSS region transcription start site region 46196
Tssr51010 5 53009052 to 53009075 23 - TSS region transcription start site region 51010
Tssr46197 5 53038081 to 53038085 4 + TSS region transcription start site region 46197
Gm17182 5 53047742 to 53049187 1445 - antisense lncRNA gene predicted gene 17182
Cpgi15865 5 53048793 to 53049647 854 CpG island CpG island 15865
Tssr46198 5 53049121 to 53049136 15 + TSS region transcription start site region 46198
Tssr46199 5 53049146 to 53049156 10 + TSS region transcription start site region 46199
Slc34a2 5 53049203 to 53071664 22461 + protein coding gene solute carrier family 34 (sodium phosphate), member 2
Tssr46200 5 53049346 to 53049363 17 + TSS region transcription start site region 46200
Tssr46201 5 53057725 to 53057733 8 + TSS region transcription start site region 46201
Tssr46202 5 53059174 to 53059189 15 + TSS region transcription start site region 46202
Tssr46203 5 53061367 to 53061378 11 + TSS region transcription start site region 46203
Tssr46204 5 53061397 to 53061408 11 + TSS region transcription start site region 46204
Tssr46205 5 53063845 to 53063856 11 + TSS region transcription start site region 46205
Tssr46206 5 53063914 to 53063924 10 + TSS region transcription start site region 46206
Tssr46207 5 53067691 to 53067702 11 + TSS region transcription start site region 46207
Tssr46208 5 53070013 to 53070027 14 + TSS region transcription start site region 46208
D5Jpk3 5 53077429 to 53077524 95 DNA segment DNA segment, Chr 5, Japan, Kominami 3
Sel1l3 5 53107083 to 53213452 106369 - protein coding gene sel-1 suppressor of lin-12-like 3 (C. elegans)
n-R5s171 5 53143160 to 53143238 78 + rRNA gene nuclear encoded rRNA 5S 171
Tssr51011 5 53152874 to 53152877 3 - TSS region transcription start site region 51011
Cpgi15866 5 53212481 to 53214214 1733 CpG island CpG island 15866
Tssr51012 5 53213268 to 53213290 22 - TSS region transcription start site region 51012
Tssr51013 5 53213297 to 53213349 52 - TSS region transcription start site region 51013
Tssr51014 5 53213418 to 53213444 26 - TSS region transcription start site region 51014
Tssr51015 5 53213447 to 53213473 26 - TSS region transcription start site region 51015
Gm30464 5 53220959 to 53238504 17545 + lncRNA gene predicted gene, 30464
Gm30519 5 53239544 to 53246909 7365 - lncRNA gene predicted gene, 30519
Tssr51016 5 53246900 to 53246911 11 - TSS region transcription start site region 51016
Gm40303 5 53264177 to 53267019 2842 - lncRNA gene predicted gene, 40303
Cpgi15867 5 53266885 to 53267529 644 CpG island CpG island 15867
Tssr46209 5 53267103 to 53267127 24 + TSS region transcription start site region 46209
Smim20 5 53267106 to 53278540 11434 + protein coding gene small integral membrane protein 20
Tssr46210 5 53267130 to 53267189 59 + TSS region transcription start site region 46210
Hrvhf1 5 53276081 to 53276081 0 QTL heart rate variability, high frequency 1
Gm45495 5 53281810 to 53283509 1699 + lincRNA gene predicted gene 45495
D5Mit132 5 53289932 to 53290073 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 132
D5Mit132.2 5 53290051 to 53290177 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 132.2
D5Mit183 5 53337144 to 53337256 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 183
Lith13 5 53337144 to 53337256 112 QTL lithogenic gene 13
n-R5s172 5 53346259 to 53346372 113 - rRNA gene nuclear encoded rRNA 5S 172
Gm42745 5 53360656 to 53371774 11118 - lincRNA gene predicted gene 42745