Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:50577305-52417311

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43016 5 50543642 to 50689221 145579 + lincRNA gene predicted gene 43016
D5Mit393.1 5 50643170 to 50643283 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 393.1
Gm4962 5 50679782 to 50682691 2909 + pseudogene predicted gene 4962
Tssr46162 5 50821436 to 50821439 3 + TSS region transcription start site region 46162
Gm43014 5 50838317 to 50840759 2442 + unclassified gene predicted gene 43014
Gm43015 5 50921342 to 50921906 564 + pseudogene predicted gene 43015
Tssr46163 5 51040098 to 51040105 7 + TSS region transcription start site region 46163
D5Dcr60 5 51047743 to 51047838 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 60
Tssr46164 5 51052337 to 51052342 5 + TSS region transcription start site region 46164
Gm40319 5 51052381 to 51052861 480 + pseudogene predicted gene, 40319
D5Dcr61 5 51160804 to 51160899 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 61
Gm44377 5 51223588 to 51223674 86 - miRNA gene predicted gene, 44377
Gm29924 5 51283814 to 51289330 5516 - lncRNA gene predicted gene, 29924
D5Dcr62 5 51433103 to 51433198 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 62
Ppargc1a 5 51454250 to 51567726 113476 - protein coding gene peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
Tssr50960 5 51457745 to 51457757 12 - TSS region transcription start site region 50960
Tssr50961 5 51458075 to 51458100 25 - TSS region transcription start site region 50961
Tssr50962 5 51458117 to 51458135 18 - TSS region transcription start site region 50962
Tssr50963 5 51479280 to 51479304 24 - TSS region transcription start site region 50963
Gm42614 5 51482752 to 51484305 1553 - unclassified gene predicted gene 42614
Gm42615 5 51491097 to 51492916 1819 - unclassified gene predicted gene 42615
Tssr50964 5 51495726 to 51495741 15 - TSS region transcription start site region 50964
Tssr50965 5 51495798 to 51495809 11 - TSS region transcription start site region 50965
Tssr50966 5 51497305 to 51497311 6 - TSS region transcription start site region 50966
Gm42613 5 51499528 to 51501458 1930 + unclassified gene predicted gene 42613
Gm43605 5 51510868 to 51514293 3425 - unclassified gene predicted gene 43605
Tssr50967 5 51526310 to 51526314 4 - TSS region transcription start site region 50967
Tssr50968 5 51534526 to 51534529 3 - TSS region transcription start site region 50968
Tssr50969 5 51547569 to 51547573 4 - TSS region transcription start site region 50969
Tssr50970 5 51553862 to 51553888 26 - TSS region transcription start site region 50970
Tssr50971 5 51553896 to 51553905 9 - TSS region transcription start site region 50971
D5Dcr63 5 51557422 to 51557518 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 63
Tssr50972 5 51567143 to 51567148 5 - TSS region transcription start site region 50972
Tssr50973 5 51567717 to 51567732 15 - TSS region transcription start site region 50973
D5Dcr64 5 51572326 to 51572421 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 64
Tssr50974 5 51723577 to 51723579 2 - TSS region transcription start site region 50974
D5Mit298 5 51738465 to 51738587 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 298
Tssr50975 5 51772705 to 51772726 21 - TSS region transcription start site region 50975
Tssr50976 5 51797221 to 51797226 5 - TSS region transcription start site region 50976
Gm43606 5 51855220 to 51858775 3555 - unclassified gene predicted gene 43606
Cpgi15851 5 51868361 to 51868515 154 CpG island CpG island 15851
Tssr50977 5 51872101 to 51872104 3 - TSS region transcription start site region 50977
Gm42616 5 51875419 to 51879602 4183 - unclassified gene predicted gene 42616
Gm42617 5 51891986 to 51893214 1228 - unclassified gene predicted gene 42617
Gm43175 5 51907122 to 51910931 3809 - unclassified gene predicted gene 43175
Tssr50978 5 51910838 to 51910846 8 - TSS region transcription start site region 50978
Tssr50979 5 52015481 to 52015485 4 - TSS region transcription start site region 50979
Tssr50980 5 52034199 to 52034245 46 - TSS region transcription start site region 50980
Gm43174 5 52079888 to 52082332 2444 - unclassified gene predicted gene 43174
Cpgi15852 5 52112771 to 52116651 3880 CpG island CpG island 15852
Tssr50981 5 52115771 to 52115791 20 - TSS region transcription start site region 50981
Tssr50982 5 52115805 to 52115848 43 - TSS region transcription start site region 50982
Tssr50983 5 52115904 to 52115917 13 - TSS region transcription start site region 50983
Tssr50984 5 52115933 to 52115979 46 - TSS region transcription start site region 50984
Gm43177 5 52117312 to 52118523 1211 + lincRNA gene predicted gene 43177
Gm40302 5 52128818 to 52138873 10055 + lncRNA gene predicted gene, 40302
Mir6417 5 52135902 to 52136017 115 - miRNA gene microRNA 6417
Gm43176 5 52139585 to 52142573 2988 - unclassified gene predicted gene 43176
Dhx15 5 52150203 to 52190514 40311 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 15
Tssr50985 5 52154308 to 52154312 4 - TSS region transcription start site region 50985
Gm43178 5 52174370 to 52175755 1385 - unclassified gene predicted gene 43178
Tssr50986 5 52184603 to 52184615 12 - TSS region transcription start site region 50986
Cpgi15853 5 52189795 to 52190874 1079 CpG island CpG island 15853
Tssr46165 5 52189860 to 52189871 11 + TSS region transcription start site region 46165
Tssr50987 5 52190041 to 52190086 45 - TSS region transcription start site region 50987
Tssr50988 5 52190484 to 52190524 40 - TSS region transcription start site region 50988
Tssr1480 5 52190536 to 52190543 7 - TSS region transcription start site region 1480
Tssr46166 5 52190650 to 52190704 54 + TSS region transcription start site region 46166
9230114K14Rik 5 52190681 to 52197984 7303 + lncRNA gene RIKEN cDNA 9230114K14 gene
Tssr46167 5 52190719 to 52190728 9 + TSS region transcription start site region 46167
Tssr50989 5 52192184 to 52192205 21 - TSS region transcription start site region 50989
C130083M11Rik 5 52199984 to 52216433 16449 - lincRNA gene RIKEN cDNA C130083M11 gene
Gm43180 5 52239336 to 52242221 2885 + unclassified gene predicted gene 43180
Gm43179 5 52342086 to 52342360 274 - lincRNA gene predicted gene 43179
Gm25601 5 52343118 to 52343222 104 - snRNA gene predicted gene, 25601
Sod3 5 52363804 to 52369738 5934 + protein coding gene superoxide dismutase 3, extracellular
Tssr46168 5 52363912 to 52363923 11 + TSS region transcription start site region 46168
Tssr46169 5 52363925 to 52363955 30 + TSS region transcription start site region 46169
Tssr46170 5 52363956 to 52363980 24 + TSS region transcription start site region 46170
D5Dcr65 5 52366647 to 52366742 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 65
Cpgi15854 5 52368104 to 52368938 834 CpG island CpG island 15854
Tssr46171 5 52368452 to 52368464 12 + TSS region transcription start site region 46171
Tssr46172 5 52368471 to 52368517 46 + TSS region transcription start site region 46172
Tssr46173 5 52368549 to 52368577 28 + TSS region transcription start site region 46173
Tssr46174 5 52368749 to 52368756 7 + TSS region transcription start site region 46174
Tssr46175 5 52368777 to 52368789 12 + TSS region transcription start site region 46175
Tssr46176 5 52368791 to 52368808 17 + TSS region transcription start site region 46176
Tssr46177 5 52368819 to 52368845 26 + TSS region transcription start site region 46177
Tssr46178 5 52369092 to 52369115 23 + TSS region transcription start site region 46178
Tssr50990 5 52369200 to 52369219 19 - TSS region transcription start site region 50990
Ccdc149 5 52374651 to 52471521 96870 - protein coding gene coiled-coil domain containing 149
D5Dcr66 5 52416214 to 52416309 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 66
D5Mit52 5 52416644 to 52416787 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 52