Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:49488908-50629010

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Letm1-D5Mit81)3Jcs 5 33739675 to 50331534 16591859 chromosomal deletion deletion, Chr 5, John C. Schimenti 3
Kcnip4 5 48389503 to 49524904 1135401 - protein coding gene Kv channel interacting protein 4
Tssr50950 5 49497201 to 49497203 2 - TSS region transcription start site region 50950
Tssr50951 5 49510240 to 49510243 3 - TSS region transcription start site region 50951
2900064K03Rik 5 49515825 to 49518937 3112 - unclassified gene RIKEN cDNA 2900064K03 gene
Cpgi15848 5 49524287 to 49525114 827 CpG island CpG island 15848
Tssr50952 5 49524790 to 49524805 15 - TSS region transcription start site region 50952
Tssr50953 5 49524809 to 49524890 81 - TSS region transcription start site region 50953
Tssr50954 5 49524987 to 49524998 11 - TSS region transcription start site region 50954
Tssr50955 5 49525076 to 49525085 9 - TSS region transcription start site region 50955
Gm5555 5 49552158 to 49553268 1110 + pseudogene predicted pseudogene 5555
Gm40299 5 49603457 to 49615263 11806 + lncRNA gene predicted gene, 40299
Cpgi15849 5 49623364 to 49623588 224 CpG island CpG island 15849
Tssr1479 5 49760411 to 49760412 1 + TSS region transcription start site region 1479
D5Mit131 5 49835810 to 49836023 213 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 131
Gm7988 5 49900006 to 49902300 2294 - pseudogene predicted gene 7988
Gm42461 5 49943409 to 49944558 1149 - unclassified gene predicted gene 42461
Adgra3 5 49959951 to 50058996 99045 - protein coding gene adhesion G protein-coupled receptor A3
Tssr50956 5 50024008 to 50024011 3 - TSS region transcription start site region 50956
Cpgi15850 5 50058080 to 50059329 1249 CpG island CpG island 15850
Tssr50957 5 50058908 to 50059010 102 - TSS region transcription start site region 50957
Gm42460 5 50059096 to 50061662 2566 + unclassified gene predicted gene 42460
Gm36702 5 50061165 to 50073265 12100 - lncRNA gene predicted gene, 36702
Gm40300 5 50122710 to 50126347 3637 - lncRNA gene predicted gene, 40300
4930448I18Rik 5 50151333 to 50156092 4759 + lincRNA gene RIKEN cDNA 4930448I18 gene
D5Dcr43 5 50242810 to 50242905 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 43
Mir8117 5 50252762 to 50252868 106 + miRNA gene microRNA 8117
Gm40301 5 50277150 to 50282245 5095 + lncRNA gene predicted gene, 40301
Gm22618 5 50290380 to 50290486 106 - snRNA gene predicted gene, 22618
D5Dcr44 5 50294155 to 50294250 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 44
Gm7205 5 50298187 to 50298982 795 + pseudogene predicted gene 7205
Hbnr9 5 50331325 to 50331534 209 QTL Heligmosomoides bakeri nematode resistance 9
D5Mit81 5 50331325 to 50331534 209 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 81
Gm36760 5 50402136 to 50410333 8197 + lncRNA gene predicted gene, 36760
D5Mit54 5 50426432 to 50426586 154 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 54
Gm36814 5 50504487 to 50543596 39109 - lncRNA gene predicted gene, 36814
Gm42459 5 50517473 to 50518214 741 + pseudogene predicted gene 42459
Tssr50958 5 50543529 to 50543539 10 - TSS region transcription start site region 50958
Tssr50959 5 50543588 to 50543591 3 - TSS region transcription start site region 50959
Gm43016 5 50543642 to 50689221 145579 + lincRNA gene predicted gene 43016
Tssr46161 5 50543646 to 50543675 29 + TSS region transcription start site region 46161