Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:49104790-49944805

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnip4 5 48389503 to 49524904 1135401 - protein coding gene Kv channel interacting protein 4
Tssr50935 5 49112589 to 49112600 11 - TSS region transcription start site region 50935
Gm42769 5 49115759 to 49117417 1658 - unclassified gene predicted gene 42769
Gm42770 5 49124587 to 49128741 4154 - unclassified gene predicted gene 42770
Tssr50936 5 49131027 to 49131072 45 - TSS region transcription start site region 50936
Tssr50937 5 49132026 to 49132029 3 - TSS region transcription start site region 50937
Tssr50938 5 49159372 to 49159376 4 - TSS region transcription start site region 50938
Tssr50939 5 49174704 to 49174742 38 - TSS region transcription start site region 50939
Tssr50940 5 49176389 to 49176391 2 - TSS region transcription start site region 50940
Tssr50941 5 49204273 to 49204281 8 - TSS region transcription start site region 50941
Tssr50942 5 49216151 to 49216158 7 - TSS region transcription start site region 50942
Gm43048 5 49217301 to 49217688 387 - unclassified gene predicted gene 43048
Gm42771 5 49219676 to 49222161 2485 - unclassified gene predicted gene 42771
D5Mit299 5 49264801 to 49264914 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 299
Tssr50943 5 49285595 to 49285609 14 - TSS region transcription start site region 50943
Tssr50944 5 49285653 to 49285699 46 - TSS region transcription start site region 50944
Tssr50945 5 49291743 to 49291746 3 - TSS region transcription start site region 50945
Tssr50946 5 49323143 to 49323154 11 - TSS region transcription start site region 50946
Tssr50947 5 49334944 to 49334948 4 - TSS region transcription start site region 50947
Tssr50948 5 49341487 to 49341491 4 - TSS region transcription start site region 50948
Gm42772 5 49408792 to 49411832 3040 - unclassified gene predicted gene 42772
Gm19932 5 49423842 to 49424154 312 + pseudogene predicted gene, 19932
Gm43670 5 49425017 to 49426783 1766 + unclassified gene predicted gene 43670
Tssr50949 5 49473332 to 49473337 5 - TSS region transcription start site region 50949
Tssr50950 5 49497201 to 49497203 2 - TSS region transcription start site region 50950
Tssr50951 5 49510240 to 49510243 3 - TSS region transcription start site region 50951
2900064K03Rik 5 49515825 to 49518937 3112 - unclassified gene RIKEN cDNA 2900064K03 gene
Cpgi15848 5 49524287 to 49525114 827 CpG island CpG island 15848
Tssr50952 5 49524790 to 49524805 15 - TSS region transcription start site region 50952
Tssr50953 5 49524809 to 49524890 81 - TSS region transcription start site region 50953
Tssr50954 5 49524987 to 49524998 11 - TSS region transcription start site region 50954
Tssr50955 5 49525076 to 49525085 9 - TSS region transcription start site region 50955
Gm5555 5 49552158 to 49553268 1110 + pseudogene predicted pseudogene 5555
Gm40299 5 49603457 to 49615263 11806 + lncRNA gene predicted gene, 40299
Cpgi15849 5 49623364 to 49623588 224 CpG island CpG island 15849
Tssr1479 5 49760411 to 49760412 1 + TSS region transcription start site region 1479
D5Mit131 5 49835810 to 49836023 213 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 131
Gm7988 5 49900006 to 49902300 2294 - pseudogene predicted gene 7988
Gm42461 5 49943409 to 49944558 1149 - unclassified gene predicted gene 42461