Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:48001672-48424245

Filter by:
23 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slit2 5 47983138 to 48307733 324595 + protein coding gene slit guidance ligand 2
Tssr46153 5 48001658 to 48001692 34 + TSS region transcription start site region 46153
4930518C09Rik 5 48003065 to 48005707 2642 - antisense lncRNA gene RIKEN cDNA 4930518C09 gene
Gm20475 5 48005784 to 48007923 2139 + sense intronic lncRNA gene predicted gene 20475
Tssr46154 5 48011140 to 48011151 11 + TSS region transcription start site region 46154
Tssr46155 5 48022891 to 48022894 3 + TSS region transcription start site region 46155
Tssr46156 5 48050546 to 48050551 5 + TSS region transcription start site region 46156
Gm43426 5 48058051 to 48060647 2596 + unclassified gene predicted gene 43426
Gm42536 5 48127084 to 48128696 1612 + unclassified gene predicted gene 42536
Tssr1477 5 48188039 to 48188047 8 - TSS region transcription start site region 1477
Gm42537 5 48211672 to 48214245 2573 + unclassified gene predicted gene 42537
Mir218-1 5 48223942 to 48224051 109 + miRNA gene microRNA 218-1
Gm42534 5 48279667 to 48281420 1753 + unclassified gene predicted gene 42534
Gm42535 5 48324612 to 48326010 1398 + unclassified gene predicted gene 42535
Tssr50920 5 48331423 to 48331426 3 - TSS region transcription start site region 50920
Cpgi15847 5 48372105 to 48372662 557 CpG island CpG island 15847
Pacrgl 5 48372335 to 48388845 16510 + protein coding gene PARK2 co-regulated-like
Tssr46157 5 48372339 to 48372362 23 + TSS region transcription start site region 46157
Tssr46158 5 48372363 to 48372420 57 + TSS region transcription start site region 46158
Kcnip4 5 48389503 to 49524904 1135401 - protein coding gene Kv channel interacting protein 4
5730480H06Rik 5 48395573 to 48414294 18721 + protein coding gene RIKEN cDNA 5730480H06 gene
Tssr46159 5 48401017 to 48401024 7 + TSS region transcription start site region 46159
Hplq1 5 48413116 to 48413116 0 QTL hot plate latency 1