MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:47880546-48220551

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19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm43427	5	47975005 to 47975335	330	+	pseudogene	predicted gene 43427
Cpgi15844	5	47982750 to 47984742	1992		CpG island	CpG island 15844
Slit2	5	47983138 to 48307733	324595	+	protein coding gene	slit guidance ligand 2
Tssr46149	5	47983147 to 47983162	15	+	TSS region	transcription start site region 46149
Tssr46150	5	47984320 to 47984346	26	+	TSS region	transcription start site region 46150
Cpgi15845	5	47984931 to 47985314	383		CpG island	CpG island 15845
Cpgi15846	5	47985877 to 47986518	641		CpG island	CpG island 15846
Tssr46151	5	47990790 to 47990794	4	+	TSS region	transcription start site region 46151
Tssr46152	5	48001398 to 48001412	14	+	TSS region	transcription start site region 46152
Tssr46153	5	48001658 to 48001692	34	+	TSS region	transcription start site region 46153
4930518C09Rik	5	48003065 to 48005707	2642	-	antisense lncRNA gene	RIKEN cDNA 4930518C09 gene
Gm20475	5	48005784 to 48007923	2139	+	sense intronic lncRNA gene	predicted gene 20475
Tssr46154	5	48011140 to 48011151	11	+	TSS region	transcription start site region 46154
Tssr46155	5	48022891 to 48022894	3	+	TSS region	transcription start site region 46155
Tssr46156	5	48050546 to 48050551	5	+	TSS region	transcription start site region 46156
Gm43426	5	48058051 to 48060647	2596	+	unclassified gene	predicted gene 43426
Gm42536	5	48127084 to 48128696	1612	+	unclassified gene	predicted gene 42536
Tssr1477	5	48188039 to 48188047	8	-	TSS region	transcription start site region 1477
Gm42537	5	48211672 to 48214245	2573	+	unclassified gene	predicted gene 42537