Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:47873457-51345263

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145 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Letm1-D5Mit81)3Jcs 5 33739675 to 50331534 16591859 chromosomal deletion deletion, Chr 5, John C. Schimenti 3
Gm43427 5 47975005 to 47975335 330 + pseudogene predicted gene 43427
Cpgi15844 5 47982750 to 47984742 1992 CpG island CpG island 15844
Slit2 5 47983138 to 48307733 324595 + protein coding gene slit guidance ligand 2
Tssr46149 5 47983147 to 47983162 15 + TSS region transcription start site region 46149
Tssr46150 5 47984320 to 47984346 26 + TSS region transcription start site region 46150
Cpgi15845 5 47984931 to 47985314 383 CpG island CpG island 15845
Cpgi15846 5 47985877 to 47986518 641 CpG island CpG island 15846
Tssr46151 5 47990790 to 47990794 4 + TSS region transcription start site region 46151
Tssr46152 5 48001398 to 48001412 14 + TSS region transcription start site region 46152
Tssr46153 5 48001658 to 48001692 34 + TSS region transcription start site region 46153
4930518C09Rik 5 48003065 to 48005707 2642 - antisense lncRNA gene RIKEN cDNA 4930518C09 gene
Gm20475 5 48005784 to 48007923 2139 + sense intronic lncRNA gene predicted gene 20475
Tssr46154 5 48011140 to 48011151 11 + TSS region transcription start site region 46154
Tssr46155 5 48022891 to 48022894 3 + TSS region transcription start site region 46155
Tssr46156 5 48050546 to 48050551 5 + TSS region transcription start site region 46156
Gm43426 5 48058051 to 48060647 2596 + unclassified gene predicted gene 43426
Gm42536 5 48127084 to 48128696 1612 + unclassified gene predicted gene 42536
Tssr1477 5 48188039 to 48188047 8 - TSS region transcription start site region 1477
Gm42537 5 48211672 to 48214245 2573 + unclassified gene predicted gene 42537
Mir218-1 5 48223942 to 48224051 109 + miRNA gene microRNA 218-1
Gm42534 5 48279667 to 48281420 1753 + unclassified gene predicted gene 42534
Gm42535 5 48324612 to 48326010 1398 + unclassified gene predicted gene 42535
Tssr50920 5 48331423 to 48331426 3 - TSS region transcription start site region 50920
Cpgi15847 5 48372105 to 48372662 557 CpG island CpG island 15847
Pacrgl 5 48372335 to 48388845 16510 + protein coding gene PARK2 co-regulated-like
Tssr46157 5 48372339 to 48372362 23 + TSS region transcription start site region 46157
Tssr46158 5 48372363 to 48372420 57 + TSS region transcription start site region 46158
Kcnip4 5 48389503 to 49524904 1135401 - protein coding gene Kv channel interacting protein 4
5730480H06Rik 5 48395573 to 48414294 18721 + protein coding gene RIKEN cDNA 5730480H06 gene
Tssr46159 5 48401017 to 48401024 7 + TSS region transcription start site region 46159
Hplq1 5 48413116 to 48413116 0 QTL hot plate latency 1
Gm43831 5 48535344 to 48537941 2597 - unclassified gene predicted gene 43831
Gm20700 5 48590889 to 48599994 9105 + antisense lncRNA gene predicted gene 20700
Tssr50921 5 48599987 to 48600000 13 - TSS region transcription start site region 50921
Gm43648 5 48624669 to 48627153 2484 - unclassified gene predicted gene 43648
Gm19031 5 48665905 to 48667269 1364 + pseudogene predicted gene, 19031
Tssr46160 5 48676430 to 48676436 6 + TSS region transcription start site region 46160
Gm43829 5 48712090 to 48715891 3801 - unclassified gene predicted gene 43829
Tssr50922 5 48749335 to 48749351 16 - TSS region transcription start site region 50922
Tssr50923 5 48754521 to 48754536 15 - TSS region transcription start site region 50923
Tssr1478 5 48766431 to 48766432 1 - TSS region transcription start site region 1478
Tssr50924 5 48781025 to 48781061 36 - TSS region transcription start site region 50924
Tssr50925 5 48781199 to 48781210 11 - TSS region transcription start site region 50925
Tssr50926 5 48786924 to 48786925 1 - TSS region transcription start site region 50926
Gm43830 5 48790900 to 48791966 1066 - unclassified gene predicted gene 43830
Gm43319 5 48799010 to 48801279 2269 - unclassified gene predicted gene 43319
Gm42919 5 48802728 to 48804011 1283 - unclassified gene predicted gene 42919
Tssr50927 5 48813515 to 48813526 11 - TSS region transcription start site region 50927
Gm43321 5 48819476 to 48821884 2408 - unclassified gene predicted gene 43321
Gm43320 5 48843420 to 48846335 2915 - unclassified gene predicted gene 43320
Tssr50928 5 48866122 to 48866129 7 - TSS region transcription start site region 50928
Tssr50929 5 48889531 to 48889553 22 - TSS region transcription start site region 50929
Tssr50930 5 48914505 to 48914508 3 - TSS region transcription start site region 50930
Gm10025 5 48924116 to 48924491 375 + pseudogene predicted gene 10025
D5Mit253 5 48924706 to 48924925 219 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 253
Gm10048 5 48924954 to 48928740 3786 - unclassified gene predicted gene 10048
Tssr50931 5 48934185 to 48934189 4 - TSS region transcription start site region 50931
Tssr50932 5 48935465 to 48935483 18 - TSS region transcription start site region 50932
Gm43318 5 48948021 to 48949969 1948 - unclassified gene predicted gene 43318
Gm43341 5 48978278 to 48979585 1307 - unclassified gene predicted gene 43341
C030015E24Rik 5 48997712 to 48998539 827 - unclassified gene RIKEN cDNA C030015E24 gene
Gm43317 5 49005412 to 49007955 2543 - unclassified gene predicted gene 43317
Tssr50933 5 49012152 to 49012156 4 - TSS region transcription start site region 50933
Gm43316 5 49017513 to 49018807 1294 - unclassified gene predicted gene 43316
Gm42766 5 49021007 to 49022338 1331 - unclassified gene predicted gene 42766
Tssr50934 5 49024674 to 49024675 1 - TSS region transcription start site region 50934
Gm43046 5 49069010 to 49071460 2450 - unclassified gene predicted gene 43046
Gm43047 5 49070003 to 49073462 3459 + unclassified gene predicted gene 43047
Gm42767 5 49074276 to 49074907 631 - unclassified gene predicted gene 42767
Gm42768 5 49083874 to 49086770 2896 - unclassified gene predicted gene 42768
Tssr50935 5 49112589 to 49112600 11 - TSS region transcription start site region 50935
Gm42769 5 49115759 to 49117417 1658 - unclassified gene predicted gene 42769
Gm42770 5 49124587 to 49128741 4154 - unclassified gene predicted gene 42770
Tssr50936 5 49131027 to 49131072 45 - TSS region transcription start site region 50936
Tssr50937 5 49132026 to 49132029 3 - TSS region transcription start site region 50937
Tssr50938 5 49159372 to 49159376 4 - TSS region transcription start site region 50938
Tssr50939 5 49174704 to 49174742 38 - TSS region transcription start site region 50939
Tssr50940 5 49176389 to 49176391 2 - TSS region transcription start site region 50940
Tssr50941 5 49204273 to 49204281 8 - TSS region transcription start site region 50941
Tssr50942 5 49216151 to 49216158 7 - TSS region transcription start site region 50942
Gm43048 5 49217301 to 49217688 387 - unclassified gene predicted gene 43048
Gm42771 5 49219676 to 49222161 2485 - unclassified gene predicted gene 42771
D5Mit299 5 49264801 to 49264914 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 299
Tssr50943 5 49285595 to 49285609 14 - TSS region transcription start site region 50943
Tssr50944 5 49285653 to 49285699 46 - TSS region transcription start site region 50944
Tssr50945 5 49291743 to 49291746 3 - TSS region transcription start site region 50945
Tssr50946 5 49323143 to 49323154 11 - TSS region transcription start site region 50946
Tssr50947 5 49334944 to 49334948 4 - TSS region transcription start site region 50947
Tssr50948 5 49341487 to 49341491 4 - TSS region transcription start site region 50948
Gm42772 5 49408792 to 49411832 3040 - unclassified gene predicted gene 42772
Gm19932 5 49423842 to 49424154 312 + pseudogene predicted gene, 19932
Gm43670 5 49425017 to 49426783 1766 + unclassified gene predicted gene 43670
Tssr50949 5 49473332 to 49473337 5 - TSS region transcription start site region 50949
Tssr50950 5 49497201 to 49497203 2 - TSS region transcription start site region 50950
Tssr50951 5 49510240 to 49510243 3 - TSS region transcription start site region 50951
2900064K03Rik 5 49515825 to 49518937 3112 - unclassified gene RIKEN cDNA 2900064K03 gene
Cpgi15848 5 49524287 to 49525114 827 CpG island CpG island 15848
Tssr50952 5 49524790 to 49524805 15 - TSS region transcription start site region 50952
Tssr50953 5 49524809 to 49524890 81 - TSS region transcription start site region 50953
Tssr50954 5 49524987 to 49524998 11 - TSS region transcription start site region 50954
Tssr50955 5 49525076 to 49525085 9 - TSS region transcription start site region 50955
Gm5555 5 49552158 to 49553268 1110 + pseudogene predicted pseudogene 5555
Gm40299 5 49603457 to 49615263 11806 + lncRNA gene predicted gene, 40299
Cpgi15849 5 49623364 to 49623588 224 CpG island CpG island 15849
Tssr1479 5 49760411 to 49760412 1 + TSS region transcription start site region 1479
D5Mit131 5 49835810 to 49836023 213 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 131
Gm7988 5 49900006 to 49902300 2294 - pseudogene predicted gene 7988
Gm42461 5 49943409 to 49944558 1149 - unclassified gene predicted gene 42461
Adgra3 5 49959951 to 50058996 99045 - protein coding gene adhesion G protein-coupled receptor A3
Tssr50956 5 50024008 to 50024011 3 - TSS region transcription start site region 50956
Cpgi15850 5 50058080 to 50059329 1249 CpG island CpG island 15850
Tssr50957 5 50058908 to 50059010 102 - TSS region transcription start site region 50957
Gm42460 5 50059096 to 50061662 2566 + unclassified gene predicted gene 42460
Gm36702 5 50061165 to 50073265 12100 - lncRNA gene predicted gene, 36702
Gm40300 5 50122710 to 50126347 3637 - lncRNA gene predicted gene, 40300
4930448I18Rik 5 50151333 to 50156092 4759 + lincRNA gene RIKEN cDNA 4930448I18 gene
D5Dcr43 5 50242810 to 50242905 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 43
Mir8117 5 50252762 to 50252868 106 + miRNA gene microRNA 8117
Gm40301 5 50277150 to 50282245 5095 + lncRNA gene predicted gene, 40301
Gm22618 5 50290380 to 50290486 106 - snRNA gene predicted gene, 22618
D5Dcr44 5 50294155 to 50294250 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 44
Gm7205 5 50298187 to 50298982 795 + pseudogene predicted gene 7205
D5Mit81 5 50331325 to 50331534 209 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 81
Hbnr9 5 50331325 to 50331534 209 QTL Heligmosomoides bakeri nematode resistance 9
Gm36760 5 50402136 to 50410333 8197 + lncRNA gene predicted gene, 36760
D5Mit54 5 50426432 to 50426586 154 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 54
Gm36814 5 50504487 to 50543596 39109 - lncRNA gene predicted gene, 36814
Gm42459 5 50517473 to 50518214 741 + pseudogene predicted gene 42459
Tssr50958 5 50543529 to 50543539 10 - TSS region transcription start site region 50958
Tssr50959 5 50543588 to 50543591 3 - TSS region transcription start site region 50959
Gm43016 5 50543642 to 50689221 145579 + lincRNA gene predicted gene 43016
Tssr46161 5 50543646 to 50543675 29 + TSS region transcription start site region 46161
D5Mit393.1 5 50643170 to 50643283 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 393.1
Gm4962 5 50679782 to 50682691 2909 + pseudogene predicted gene 4962
Tssr46162 5 50821436 to 50821439 3 + TSS region transcription start site region 46162
Gm43014 5 50838317 to 50840759 2442 + unclassified gene predicted gene 43014
Gm43015 5 50921342 to 50921906 564 + pseudogene predicted gene 43015
Tssr46163 5 51040098 to 51040105 7 + TSS region transcription start site region 46163
D5Dcr60 5 51047743 to 51047838 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 60
Tssr46164 5 51052337 to 51052342 5 + TSS region transcription start site region 46164
Gm40319 5 51052381 to 51052861 480 + pseudogene predicted gene, 40319
D5Dcr61 5 51160804 to 51160899 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 61
Gm44377 5 51223588 to 51223674 86 - miRNA gene predicted gene, 44377
Gm29924 5 51283814 to 51289330 5516 - lncRNA gene predicted gene, 29924