Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:45459705-45709501

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clrn2 5 45453751 to 45464149 10398 + protein coding gene clarin 2
Cpgi15838 5 45493118 to 45494050 932 CpG island CpG island 15838
Lap3 5 45493374 to 45512691 19317 + protein coding gene leucine aminopeptidase 3
Arp 5 45493374 to 45512691 19317 QTL Arp lymphoid/erythroid hyperplasia
Tssr1476 5 45493374 to 45493384 10 + TSS region transcription start site region 1476
Tssr46135 5 45493385 to 45493437 52 + TSS region transcription start site region 46135
Tssr46136 5 45493449 to 45493466 17 + TSS region transcription start site region 46136
Tssr46137 5 45493481 to 45493498 17 + TSS region transcription start site region 46137
Tssr46138 5 45512321 to 45512337 16 + TSS region transcription start site region 46138
Cpgi15839 5 45520147 to 45520816 669 CpG island CpG island 15839
Med28 5 45520229 to 45529276 9047 + protein coding gene mediator complex subunit 28
Tssr46139 5 45520282 to 45520327 45 + TSS region transcription start site region 46139
Tssr46140 5 45524062 to 45524069 7 + TSS region transcription start site region 46140
Fam184b 5 45529705 to 45639501 109796 - protein coding gene family with sequence similarity 184, member B
Gm42521 5 45531072 to 45533111 2039 + unclassified gene predicted gene 42521
Gm42520 5 45556680 to 45558181 1501 + unclassified gene predicted gene 42520
Cpgi15840 5 45639007 to 45639607 600 CpG island CpG island 15840
Tssr50907 5 45639254 to 45639274 20 - TSS region transcription start site region 50907
9630001P10Rik 5 45639275 to 45645469 6194 + antisense lncRNA gene RIKEN cDNA 9630001P10 gene
Tssr50908 5 45639293 to 45639311 18 - TSS region transcription start site region 50908
Tssr50909 5 45639368 to 45639408 40 - TSS region transcription start site region 50909
Tssr50910 5 45639444 to 45639457 13 - TSS region transcription start site region 50910
Tssr50911 5 45639515 to 45639525 10 - TSS region transcription start site region 50911
Gm43367 5 45656948 to 45657572 624 - pseudogene predicted gene 43367
Gm43366 5 45660067 to 45662721 2654 + unclassified gene predicted gene 43366
1600023N17Rik 5 45668702 to 45669708 1006 - lncRNA gene RIKEN cDNA 1600023N17 gene
Cpgi15841 5 45669245 to 45670496 1251 CpG island CpG island 15841
Tssr46141 5 45669884 to 45669901 17 + TSS region transcription start site region 46141
Tssr46142 5 45669907 to 45669945 38 + TSS region transcription start site region 46142
Ncapg 5 45669919 to 45700546 30627 + protein coding gene non-SMC condensin I complex, subunit G
Tssr46143 5 45670004 to 45670006 2 + TSS region transcription start site region 46143
Tssr46144 5 45670233 to 45670244 11 + TSS region transcription start site region 46144
Lcorl 5 45697181 to 45857615 160434 - protein coding gene ligand dependent nuclear receptor corepressor-like
Gm36401 5 45702733 to 45704760 2027 + lncRNA gene predicted gene, 36401