Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:44611948-46702572

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5D5Mit148-Qdpr)2Jcs 5 31975890 to 45450229 13474339 chromosomal deletion deletion, Chr 5, John C. Schimenti 2
Ldb2 5 44472132 to 44799680 327548 - protein coding gene LIM domain binding 2
D5Dcr59 5 44622582 to 44622677 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 59
Gm43508 5 44623919 to 44627701 3782 - unclassified gene predicted gene 43508
Tssr50892 5 44634379 to 44634382 3 - TSS region transcription start site region 50892
Gm43507 5 44641484 to 44662153 20669 + antisense lncRNA gene predicted gene 43507
Tssr50893 5 44644949 to 44644950 1 - TSS region transcription start site region 50893
Tssr50894 5 44648377 to 44648388 11 - TSS region transcription start site region 50894
Gm43504 5 44664694 to 44666731 2037 - unclassified gene predicted gene 43504
D5Mit232 5 44678123 to 44678228 105 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 232
Gm43503 5 44680194 to 44683601 3407 - unclassified gene predicted gene 43503
Gm3364 5 44700876 to 44706890 6014 - sense intronic lncRNA gene predicted gene 3364
D5Mit391 5 44721726 to 44721873 147 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 391
E030026E10Rik 5 44736337 to 44738553 2216 - unclassified gene RIKEN cDNA E030026E10 gene
Tssr50895 5 44741223 to 44741227 4 - TSS region transcription start site region 50895
Gm43509 5 44751164 to 44753757 2593 - unclassified gene predicted gene 43509
Tssr50896 5 44776678 to 44776681 3 - TSS region transcription start site region 50896
Tssr50897 5 44782481 to 44782493 12 - TSS region transcription start site region 50897
Tssr50898 5 44782527 to 44782556 29 - TSS region transcription start site region 50898
Tssr1475 5 44799590 to 44799597 7 - TSS region transcription start site region 1475
Tssr50899 5 44799643 to 44799666 23 - TSS region transcription start site region 50899
Tssr50900 5 44799685 to 44799692 7 - TSS region transcription start site region 50900
Tssr50901 5 44799917 to 44799950 33 - TSS region transcription start site region 50901
D5Mit231 5 44826239 to 44826388 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 231
Gm42750 5 44865149 to 44877138 11989 + lincRNA gene predicted gene 42750
D5Mit335 5 44868469 to 44868592 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 335
Gm36076 5 44918455 to 44925252 6797 - lncRNA gene predicted gene, 36076
4930431F12Rik 5 44966201 to 44978805 12604 + lincRNA gene RIKEN cDNA 4930431F12 gene
Gm10205 5 44983861 to 44984242 381 - pseudogene predicted gene 10205
D5Mit106 5 44991378 to 44991539 161 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 106
D5Ertd615e 5 45009171 to 45424400 415229 - lincRNA gene DNA segment, Chr 5, ERATO Doi 615, expressed
Gm46912 5 45163341 to 45174979 11638 + lncRNA gene predicted gene, 46912
Gm43303 5 45192669 to 45251929 59260 - lincRNA gene predicted gene 43303
Gm42519 5 45243652 to 45247307 3655 - unclassified gene predicted gene 42519
Qdpr 5 45434032 to 45450229 16197 - protein coding gene quinoid dihydropteridine reductase
Gm42413 5 45434389 to 45450138 15749 + antisense lncRNA gene predicted gene, 42413
Tssr50902 5 45444591 to 45444606 15 - TSS region transcription start site region 50902
Cpgi15837 5 45449482 to 45450593 1111 CpG island CpG island 15837
Tssr50903 5 45450121 to 45450139 18 - TSS region transcription start site region 50903
Tssr50904 5 45450143 to 45450201 58 - TSS region transcription start site region 50904
Tssr50905 5 45450211 to 45450220 9 - TSS region transcription start site region 50905
Tssr50906 5 45450221 to 45450230 9 - TSS region transcription start site region 50906
Clrn2 5 45453751 to 45464149 10398 + protein coding gene clarin 2
Cpgi15838 5 45493118 to 45494050 932 CpG island CpG island 15838
Lap3 5 45493374 to 45512691 19317 + protein coding gene leucine aminopeptidase 3
Tssr1476 5 45493374 to 45493384 10 + TSS region transcription start site region 1476
Arp 5 45493374 to 45512691 19317 QTL Arp lymphoid/erythroid hyperplasia
Tssr46135 5 45493385 to 45493437 52 + TSS region transcription start site region 46135
Tssr46136 5 45493449 to 45493466 17 + TSS region transcription start site region 46136
Tssr46137 5 45493481 to 45493498 17 + TSS region transcription start site region 46137
Tssr46138 5 45512321 to 45512337 16 + TSS region transcription start site region 46138
Cpgi15839 5 45520147 to 45520816 669 CpG island CpG island 15839
Med28 5 45520229 to 45529276 9047 + protein coding gene mediator complex subunit 28
Tssr46139 5 45520282 to 45520327 45 + TSS region transcription start site region 46139
Tssr46140 5 45524062 to 45524069 7 + TSS region transcription start site region 46140
Fam184b 5 45529705 to 45639501 109796 - protein coding gene family with sequence similarity 184, member B
Gm42521 5 45531072 to 45533111 2039 + unclassified gene predicted gene 42521
Gm42520 5 45556680 to 45558181 1501 + unclassified gene predicted gene 42520
Cpgi15840 5 45639007 to 45639607 600 CpG island CpG island 15840
Tssr50907 5 45639254 to 45639274 20 - TSS region transcription start site region 50907
9630001P10Rik 5 45639275 to 45645469 6194 + antisense lncRNA gene RIKEN cDNA 9630001P10 gene
Tssr50908 5 45639293 to 45639311 18 - TSS region transcription start site region 50908
Tssr50909 5 45639368 to 45639408 40 - TSS region transcription start site region 50909
Tssr50910 5 45639444 to 45639457 13 - TSS region transcription start site region 50910
Tssr50911 5 45639515 to 45639525 10 - TSS region transcription start site region 50911
Gm43367 5 45656948 to 45657572 624 - pseudogene predicted gene 43367
Gm43366 5 45660067 to 45662721 2654 + unclassified gene predicted gene 43366
1600023N17Rik 5 45668702 to 45669708 1006 - lncRNA gene RIKEN cDNA 1600023N17 gene
Cpgi15841 5 45669245 to 45670496 1251 CpG island CpG island 15841
Tssr46141 5 45669884 to 45669901 17 + TSS region transcription start site region 46141
Tssr46142 5 45669907 to 45669945 38 + TSS region transcription start site region 46142
Ncapg 5 45669919 to 45700546 30627 + protein coding gene non-SMC condensin I complex, subunit G
Tssr46143 5 45670004 to 45670006 2 + TSS region transcription start site region 46143
Tssr46144 5 45670233 to 45670244 11 + TSS region transcription start site region 46144
Lcorl 5 45697181 to 45857615 160434 - protein coding gene ligand dependent nuclear receptor corepressor-like
Gm36401 5 45702733 to 45704760 2027 + lncRNA gene predicted gene, 36401
Gm3414 5 45719667 to 45727578 7911 - lncRNA gene predicted gene 3414
Gm21020 5 45755851 to 45757541 1690 - pseudogene predicted gene, 21020
Gm43201 5 45758275 to 45761690 3415 - unclassified gene predicted gene 43201
Gm29036 5 45768867 to 45769743 876 - pseudogene predicted gene 29036
Gm43200 5 45770020 to 45772180 2160 - unclassified gene predicted gene 43200
D5Ertd798e 5 45770142 to 45770359 217 DNA segment DNA segment, Chr 5, ERATO Doi 798, expressed
Tssr50912 5 45806679 to 45806683 4 - TSS region transcription start site region 50912
Tssr50913 5 45823428 to 45823432 4 - TSS region transcription start site region 50913
Tssr50914 5 45832144 to 45832161 17 - TSS region transcription start site region 50914
Cpgi15842 5 45856088 to 45858207 2119 CpG island CpG island 15842
Tssr50915 5 45856496 to 45856507 11 - TSS region transcription start site region 50915
Tssr46145 5 45857089 to 45857120 31 + TSS region transcription start site region 46145
Tssr50916 5 45857473 to 45857511 38 - TSS region transcription start site region 50916
4930449I04Rik 5 45857642 to 45858764 1122 + protein coding gene RIKEN cDNA 4930449I04 gene
4930405L22Rik 5 45926822 to 45932409 5587 - lincRNA gene RIKEN cDNA 4930405L22 gene
Gm40298 5 45932551 to 45975408 42857 + lncRNA gene predicted gene, 40298
D5Jcs614 5 45988819 to 45988991 172 DNA segment DNA segment, Chr 5, John C. Schimenti 614
Tssr50917 5 46007542 to 46007557 15 - TSS region transcription start site region 50917
Tssr50918 5 46007570 to 46007581 11 - TSS region transcription start site region 50918
Tssr50919 5 46007591 to 46007602 11 - TSS region transcription start site region 50919
Tssr46146 5 46034408 to 46034421 13 + TSS region transcription start site region 46146
D5Mit107 5 46384596 to 46384728 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 107
Tssr46147 5 46414254 to 46414255 1 + TSS region transcription start site region 46147
Gm7931 5 46414344 to 46414614 270 + pseudogene predicted pseudogene 7931
Gm43093 5 46502129 to 46503341 1212 + unclassified gene predicted gene 43093