Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:44105705-44606047

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42966 5 44105849 to 44107539 1690 + unclassified gene predicted gene 42966
Gm35900 5 44108374 to 44133962 25588 - lncRNA gene predicted gene, 35900
D5Mit297 5 44109009 to 44109133 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 297
Gm42429 5 44134393 to 44134950 557 + unclassified gene predicted gene 42429
Gm42428 5 44136620 to 44136921 301 + lincRNA gene predicted gene 42428
Gm42427 5 44137980 to 44143271 5291 + unclassified gene predicted gene 42427
Tssr50887 5 44169210 to 44169211 1 - TSS region transcription start site region 50887
D5Dcr57 5 44172200 to 44172295 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 57
Tapt1 5 44175154 to 44226626 51472 - protein coding gene transmembrane anterior posterior transformation 1
E430021H15Rik 5 44213801 to 44217259 3458 - unclassified gene RIKEN cDNA E430021H15 gene
Gm42982 5 44219683 to 44224003 4320 + antisense lncRNA gene predicted gene 42982
Tssr46132 5 44224505 to 44224515 10 + TSS region transcription start site region 46132
Gm42983 5 44224510 to 44225324 814 + unclassified gene predicted gene 42983
Cpgi15836 5 44225932 to 44227518 1586 CpG island CpG island 15836
Gm42984 5 44226587 to 44243548 16961 + antisense lncRNA gene predicted gene 42984
Tssr50888 5 44226601 to 44226633 32 - TSS region transcription start site region 50888
Tssr50889 5 44226655 to 44226664 9 - TSS region transcription start site region 50889
Tssr46133 5 44226737 to 44226748 11 + TSS region transcription start site region 46133
Tssr46134 5 44226780 to 44226818 38 + TSS region transcription start site region 46134
Tssr50890 5 44226801 to 44226837 36 - TSS region transcription start site region 50890
Gm35959 5 44229330 to 44242162 12832 + lncRNA gene predicted gene, 35959
Gm40296 5 44306294 to 44369260 62966 + lncRNA gene predicted gene, 40296
Gm42698 5 44354861 to 44356754 1893 - pseudogene predicted gene 42698
Gm43114 5 44355705 to 44356047 342 + unclassified gene predicted gene 43114
D5Dcr58 5 44391619 to 44391716 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 58
Gm5865 5 44405957 to 44406593 636 - pseudogene predicted gene 5865
Tssr50891 5 44406344 to 44406352 8 - TSS region transcription start site region 50891
Gm36017 5 44412793 to 44427592 14799 - lincRNA gene predicted gene, 36017
Gm40297 5 44430663 to 44436073 5410 + lncRNA gene predicted gene, 40297
Ldb2 5 44472132 to 44799680 327548 - protein coding gene LIM domain binding 2
Gm42981 5 44492170 to 44495421 3251 - unclassified gene predicted gene 42981
8030487O14Rik 5 44513658 to 44514560 902 - unclassified gene RIKEN cDNA 8030487O14 gene
Gm43506 5 44516961 to 44517713 752 - unclassified gene predicted gene 43506
Gm43505 5 44585063 to 44585201 138 + unclassified gene predicted gene 43505