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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:44034393-44234950

Filter by:
39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prom1 5 43993620 to 44102032 108412 - protein coding gene prominin 1
Tssr50877 5 44038829 to 44038839 10 - TSS region transcription start site region 50877
Cd8ts1 5 44058006 to 44058109 103 QTL CD8 T cell subset 1
D5Mit79 5 44058006 to 44058109 103 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 79
Gm42716 5 44068198 to 44090854 22656 - unclassified non-coding RNA gene predicted gene 42716
Tssr50878 5 44073761 to 44073784 23 - TSS region transcription start site region 50878
Tssr1474 5 44073787 to 44073798 11 - TSS region transcription start site region 1474
Tssr50879 5 44089541 to 44089556 15 - TSS region transcription start site region 50879
Tssr50880 5 44099188 to 44099194 6 - TSS region transcription start site region 50880
Tssr50881 5 44099195 to 44099217 22 - TSS region transcription start site region 50881
Tssr50882 5 44099220 to 44099237 17 - TSS region transcription start site region 50882
2010320H13Rik 5 44099654 to 44100479 825 unclassified non-coding RNA gene RIKEN cDNA 2010320H13 gene
Gm16401 5 44100442 to 44102515 2073 + antisense lncRNA gene predicted gene 16401
Cpgi15835 5 44100451 to 44101704 1253 CpG island CpG island 15835
Tssr50883 5 44101542 to 44101560 18 - TSS region transcription start site region 50883
Tssr50884 5 44101668 to 44101745 77 - TSS region transcription start site region 50884
Tssr50885 5 44101951 to 44101965 14 - TSS region transcription start site region 50885
Tssr50886 5 44102046 to 44102061 15 - TSS region transcription start site region 50886
Gm42966 5 44105849 to 44107539 1690 + unclassified gene predicted gene 42966
Gm35900 5 44108374 to 44133962 25588 - lncRNA gene predicted gene, 35900
D5Mit297 5 44109009 to 44109133 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 297
Gm42429 5 44134393 to 44134950 557 + unclassified gene predicted gene 42429
Gm42428 5 44136620 to 44136921 301 + lincRNA gene predicted gene 42428
Gm42427 5 44137980 to 44143271 5291 + unclassified gene predicted gene 42427
Tssr50887 5 44169210 to 44169211 1 - TSS region transcription start site region 50887
D5Dcr57 5 44172200 to 44172295 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 57
Tapt1 5 44175154 to 44226626 51472 - protein coding gene transmembrane anterior posterior transformation 1
E430021H15Rik 5 44213801 to 44217259 3458 - unclassified gene RIKEN cDNA E430021H15 gene
Gm42982 5 44219683 to 44224003 4320 + antisense lncRNA gene predicted gene 42982
Tssr46132 5 44224505 to 44224515 10 + TSS region transcription start site region 46132
Gm42983 5 44224510 to 44225324 814 + unclassified gene predicted gene 42983
Cpgi15836 5 44225932 to 44227518 1586 CpG island CpG island 15836
Gm42984 5 44226587 to 44243548 16961 + antisense lncRNA gene predicted gene 42984
Tssr50888 5 44226601 to 44226633 32 - TSS region transcription start site region 50888
Tssr50889 5 44226655 to 44226664 9 - TSS region transcription start site region 50889
Tssr46133 5 44226737 to 44226748 11 + TSS region transcription start site region 46133
Tssr46134 5 44226780 to 44226818 38 + TSS region transcription start site region 46134
Tssr50890 5 44226801 to 44226837 36 - TSS region transcription start site region 50890
Gm35959 5 44229330 to 44242162 12832 + lncRNA gene predicted gene, 35959