Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:43987481-45577493

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5D5Mit148-Qdpr)2Jcs 5 31975890 to 45450229 13474339 chromosomal deletion deletion, Chr 5, John C. Schimenti 2
Prom1 5 43993620 to 44102032 108412 - protein coding gene prominin 1
Tssr50877 5 44038829 to 44038839 10 - TSS region transcription start site region 50877
D5Mit79 5 44058006 to 44058109 103 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 79
Cd8ts1 5 44058006 to 44058109 103 QTL CD8 T cell subset 1
Gm42716 5 44068198 to 44090854 22656 - unclassified non-coding RNA gene predicted gene 42716
Tssr50878 5 44073761 to 44073784 23 - TSS region transcription start site region 50878
Tssr1474 5 44073787 to 44073798 11 - TSS region transcription start site region 1474
Tssr50879 5 44089541 to 44089556 15 - TSS region transcription start site region 50879
Tssr50880 5 44099188 to 44099194 6 - TSS region transcription start site region 50880
Tssr50881 5 44099195 to 44099217 22 - TSS region transcription start site region 50881
Tssr50882 5 44099220 to 44099237 17 - TSS region transcription start site region 50882
2010320H13Rik 5 44099654 to 44100479 825 unclassified non-coding RNA gene RIKEN cDNA 2010320H13 gene
Gm16401 5 44100442 to 44102515 2073 + antisense lncRNA gene predicted gene 16401
Cpgi15835 5 44100451 to 44101704 1253 CpG island CpG island 15835
Tssr50883 5 44101542 to 44101560 18 - TSS region transcription start site region 50883
Tssr50884 5 44101668 to 44101745 77 - TSS region transcription start site region 50884
Tssr50885 5 44101951 to 44101965 14 - TSS region transcription start site region 50885
Tssr50886 5 44102046 to 44102061 15 - TSS region transcription start site region 50886
Gm42966 5 44105849 to 44107539 1690 + unclassified gene predicted gene 42966
Gm35900 5 44108374 to 44133962 25588 - lncRNA gene predicted gene, 35900
D5Mit297 5 44109009 to 44109133 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 297
Gm42429 5 44134393 to 44134950 557 + unclassified gene predicted gene 42429
Gm42428 5 44136620 to 44136921 301 + lincRNA gene predicted gene 42428
Gm42427 5 44137980 to 44143271 5291 + unclassified gene predicted gene 42427
Tssr50887 5 44169210 to 44169211 1 - TSS region transcription start site region 50887
D5Dcr57 5 44172200 to 44172295 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 57
Tapt1 5 44175154 to 44226626 51472 - protein coding gene transmembrane anterior posterior transformation 1
E430021H15Rik 5 44213801 to 44217259 3458 - unclassified gene RIKEN cDNA E430021H15 gene
Gm42982 5 44219683 to 44224003 4320 + antisense lncRNA gene predicted gene 42982
Tssr46132 5 44224505 to 44224515 10 + TSS region transcription start site region 46132
Gm42983 5 44224510 to 44225324 814 + unclassified gene predicted gene 42983
Cpgi15836 5 44225932 to 44227518 1586 CpG island CpG island 15836
Gm42984 5 44226587 to 44243548 16961 + antisense lncRNA gene predicted gene 42984
Tssr50888 5 44226601 to 44226633 32 - TSS region transcription start site region 50888
Tssr50889 5 44226655 to 44226664 9 - TSS region transcription start site region 50889
Tssr46133 5 44226737 to 44226748 11 + TSS region transcription start site region 46133
Tssr46134 5 44226780 to 44226818 38 + TSS region transcription start site region 46134
Tssr50890 5 44226801 to 44226837 36 - TSS region transcription start site region 50890
Gm35959 5 44229330 to 44242162 12832 + lncRNA gene predicted gene, 35959
Gm40296 5 44306294 to 44369260 62966 + lncRNA gene predicted gene, 40296
Gm42698 5 44354861 to 44356754 1893 - pseudogene predicted gene 42698
Gm43114 5 44355705 to 44356047 342 + unclassified gene predicted gene 43114
D5Dcr58 5 44391619 to 44391716 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 58
Gm5865 5 44405957 to 44406593 636 - pseudogene predicted gene 5865
Tssr50891 5 44406344 to 44406352 8 - TSS region transcription start site region 50891
Gm36017 5 44412793 to 44427592 14799 - lincRNA gene predicted gene, 36017
Gm40297 5 44430663 to 44436073 5410 + lncRNA gene predicted gene, 40297
Ldb2 5 44472132 to 44799680 327548 - protein coding gene LIM domain binding 2
Gm42981 5 44492170 to 44495421 3251 - unclassified gene predicted gene 42981
8030487O14Rik 5 44513658 to 44514560 902 - unclassified gene RIKEN cDNA 8030487O14 gene
Gm43506 5 44516961 to 44517713 752 - unclassified gene predicted gene 43506
Gm43505 5 44585063 to 44585201 138 + unclassified gene predicted gene 43505
D5Dcr59 5 44622582 to 44622677 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 59
Gm43508 5 44623919 to 44627701 3782 - unclassified gene predicted gene 43508
Tssr50892 5 44634379 to 44634382 3 - TSS region transcription start site region 50892
Gm43507 5 44641484 to 44662153 20669 + antisense lncRNA gene predicted gene 43507
Tssr50893 5 44644949 to 44644950 1 - TSS region transcription start site region 50893
Tssr50894 5 44648377 to 44648388 11 - TSS region transcription start site region 50894
Gm43504 5 44664694 to 44666731 2037 - unclassified gene predicted gene 43504
D5Mit232 5 44678123 to 44678228 105 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 232
Gm43503 5 44680194 to 44683601 3407 - unclassified gene predicted gene 43503
Gm3364 5 44700876 to 44706890 6014 - sense intronic lncRNA gene predicted gene 3364
D5Mit391 5 44721726 to 44721873 147 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 391
E030026E10Rik 5 44736337 to 44738553 2216 - unclassified gene RIKEN cDNA E030026E10 gene
Tssr50895 5 44741223 to 44741227 4 - TSS region transcription start site region 50895
Gm43509 5 44751164 to 44753757 2593 - unclassified gene predicted gene 43509
Tssr50896 5 44776678 to 44776681 3 - TSS region transcription start site region 50896
Tssr50897 5 44782481 to 44782493 12 - TSS region transcription start site region 50897
Tssr50898 5 44782527 to 44782556 29 - TSS region transcription start site region 50898
Tssr1475 5 44799590 to 44799597 7 - TSS region transcription start site region 1475
Tssr50899 5 44799643 to 44799666 23 - TSS region transcription start site region 50899
Tssr50900 5 44799685 to 44799692 7 - TSS region transcription start site region 50900
Tssr50901 5 44799917 to 44799950 33 - TSS region transcription start site region 50901
D5Mit231 5 44826239 to 44826388 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 231
Gm42750 5 44865149 to 44877138 11989 + lincRNA gene predicted gene 42750
D5Mit335 5 44868469 to 44868592 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 335
Gm36076 5 44918455 to 44925252 6797 - lncRNA gene predicted gene, 36076
4930431F12Rik 5 44966201 to 44978805 12604 + lincRNA gene RIKEN cDNA 4930431F12 gene
Gm10205 5 44983861 to 44984242 381 - pseudogene predicted gene 10205
D5Mit106 5 44991378 to 44991539 161 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 106
D5Ertd615e 5 45009171 to 45424400 415229 - lincRNA gene DNA segment, Chr 5, ERATO Doi 615, expressed
Gm46912 5 45163341 to 45174979 11638 + lncRNA gene predicted gene, 46912
Gm43303 5 45192669 to 45251929 59260 - lincRNA gene predicted gene 43303
Gm42519 5 45243652 to 45247307 3655 - unclassified gene predicted gene 42519
Qdpr 5 45434032 to 45450229 16197 - protein coding gene quinoid dihydropteridine reductase
Gm42413 5 45434389 to 45450138 15749 + antisense lncRNA gene predicted gene, 42413
Tssr50902 5 45444591 to 45444606 15 - TSS region transcription start site region 50902
Cpgi15837 5 45449482 to 45450593 1111 CpG island CpG island 15837
Tssr50903 5 45450121 to 45450139 18 - TSS region transcription start site region 50903
Tssr50904 5 45450143 to 45450201 58 - TSS region transcription start site region 50904
Tssr50905 5 45450211 to 45450220 9 - TSS region transcription start site region 50905
Tssr50906 5 45450221 to 45450230 9 - TSS region transcription start site region 50906
Clrn2 5 45453751 to 45464149 10398 + protein coding gene clarin 2
Cpgi15838 5 45493118 to 45494050 932 CpG island CpG island 15838
Arp 5 45493374 to 45512691 19317 QTL Arp lymphoid/erythroid hyperplasia
Lap3 5 45493374 to 45512691 19317 + protein coding gene leucine aminopeptidase 3
Tssr1476 5 45493374 to 45493384 10 + TSS region transcription start site region 1476
Tssr46135 5 45493385 to 45493437 52 + TSS region transcription start site region 46135
Tssr46136 5 45493449 to 45493466 17 + TSS region transcription start site region 46136
Tssr46137 5 45493481 to 45493498 17 + TSS region transcription start site region 46137
Tssr46138 5 45512321 to 45512337 16 + TSS region transcription start site region 46138
Cpgi15839 5 45520147 to 45520816 669 CpG island CpG island 15839
Med28 5 45520229 to 45529276 9047 + protein coding gene mediator complex subunit 28
Tssr46139 5 45520282 to 45520327 45 + TSS region transcription start site region 46139
Tssr46140 5 45524062 to 45524069 7 + TSS region transcription start site region 46140
Fam184b 5 45529705 to 45639501 109796 - protein coding gene family with sequence similarity 184, member B
Gm42521 5 45531072 to 45533111 2039 + unclassified gene predicted gene 42521
Gm42520 5 45556680 to 45558181 1501 + unclassified gene predicted gene 42520