Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:43705888-44115907

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cc2d2a 5 43662373 to 43740975 78602 + protein coding gene coiled-coil and C2 domain containing 2A
Tssr46097 5 43711568 to 43711574 6 + TSS region transcription start site region 46097
Fbxl5 5 43744618 to 43782149 37531 - protein coding gene F-box and leucine-rich repeat protein 5
Tssr50859 5 43749494 to 43749502 8 - TSS region transcription start site region 50859
Gm42462 5 43752909 to 43754271 1362 - unclassified gene predicted gene 42462
Cpgi15831 5 43781413 to 43782861 1448 CpG island CpG island 15831
Tssr50860 5 43782049 to 43782060 11 - TSS region transcription start site region 50860
Tssr50861 5 43782063 to 43782085 22 - TSS region transcription start site region 50861
Tssr50862 5 43782086 to 43782143 57 - TSS region transcription start site region 50862
Gm43182 5 43782243 to 43784770 2527 + unclassified gene predicted gene 43182
Gm43181 5 43784046 to 43786117 2071 - unclassified gene predicted gene 43181
Tssr50863 5 43784768 to 43784770 2 - TSS region transcription start site region 50863
Tssr50864 5 43786107 to 43786123 16 - TSS region transcription start site region 50864
Tssr46098 5 43803629 to 43803632 3 + TSS region transcription start site region 46098
Gm42555 5 43807705 to 43808743 1038 - lincRNA gene predicted gene 42555
Cpgi15832 5 43807875 to 43808328 453 CpG island CpG island 15832
Tssr46099 5 43808005 to 43808010 5 + TSS region transcription start site region 46099
D5Dmo8 5 43818633 to 43818764 131 DNA segment DNA segment, Chr 5, David Ornitz 8
Tssr46100 5 43818876 to 43818892 16 + TSS region transcription start site region 46100
Bst1 5 43818879 to 43843468 24589 + protein coding gene bone marrow stromal cell antigen 1
Tssr46101 5 43818899 to 43818928 29 + TSS region transcription start site region 46101
Tssr46102 5 43818939 to 43818954 15 + TSS region transcription start site region 46102
D5Jcs608 5 43820092 to 43820253 161 DNA segment DNA segment, Chr 5, John C. Schimenti 608
Tssr50865 5 43821778 to 43821799 21 - TSS region transcription start site region 50865
Tssr46103 5 43842117 to 43842138 21 + TSS region transcription start site region 46103
Tssr46104 5 43842965 to 43842980 15 + TSS region transcription start site region 46104
Tssr46105 5 43854368 to 43854398 30 + TSS region transcription start site region 46105
Tssr46106 5 43856117 to 43856154 37 + TSS region transcription start site region 46106
Tssr50866 5 43867814 to 43867826 12 - TSS region transcription start site region 50866
Tssr46107 5 43868532 to 43868546 14 + TSS region transcription start site region 46107
Tssr46108 5 43868653 to 43868666 13 + TSS region transcription start site region 46108
Tssr50867 5 43868687 to 43868699 12 - TSS region transcription start site region 50867
Tssr50868 5 43868748 to 43868762 14 - TSS region transcription start site region 50868
Tssr46109 5 43868802 to 43868866 64 + TSS region transcription start site region 46109
Cd38 5 43868809 to 43912374 43565 + protein coding gene CD38 antigen
Cpgi15833 5 43868959 to 43869293 334 CpG island CpG island 15833
Tssr50869 5 43869128 to 43869139 11 - TSS region transcription start site region 50869
Tssr50870 5 43869460 to 43869492 32 - TSS region transcription start site region 50870
Tssr46110 5 43869791 to 43869796 5 + TSS region transcription start site region 46110
Tssr46111 5 43875079 to 43875085 6 + TSS region transcription start site region 46111
Tssr46112 5 43875337 to 43875347 10 + TSS region transcription start site region 46112
Gm16014 5 43876030 to 43877304 1274 + sense intronic lncRNA gene predicted gene 16014
Tssr46113 5 43879925 to 43879932 7 + TSS region transcription start site region 46113
Tssr50871 5 43881922 to 43881928 6 - TSS region transcription start site region 50871
Tssr46114 5 43882544 to 43882553 9 + TSS region transcription start site region 46114
Tssr46115 5 43900373 to 43900421 48 + TSS region transcription start site region 46115
Tssr46116 5 43901470 to 43901519 49 + TSS region transcription start site region 46116
Tssr46117 5 43901917 to 43901957 40 + TSS region transcription start site region 46117
Tssr46118 5 43908583 to 43908632 49 + TSS region transcription start site region 46118
Gm16015 5 43909215 to 43909885 670 - antisense lncRNA gene predicted gene 16015
Tssr50872 5 43909862 to 43909881 19 - TSS region transcription start site region 50872
Tssr1473 5 43910386 to 43910393 7 + TSS region transcription start site region 1473
Tssr46119 5 43910428 to 43910432 4 + TSS region transcription start site region 46119
Tssr46120 5 43910458 to 43910472 14 + TSS region transcription start site region 46120
Tssr46121 5 43910525 to 43910531 6 + TSS region transcription start site region 46121
Tssr46122 5 43910568 to 43910575 7 + TSS region transcription start site region 46122
Tssr46123 5 43910697 to 43910711 14 + TSS region transcription start site region 46123
Tssr46124 5 43910720 to 43910733 13 + TSS region transcription start site region 46124
Tssr46125 5 43910844 to 43910862 18 + TSS region transcription start site region 46125
Tssr46126 5 43910888 to 43910907 19 + TSS region transcription start site region 46126
Tssr46127 5 43910910 to 43910976 66 + TSS region transcription start site region 46127
Tssr46128 5 43911037 to 43911051 14 + TSS region transcription start site region 46128
Tssr46129 5 43911166 to 43911177 11 + TSS region transcription start site region 46129
Gm7879 5 43913144 to 43913904 760 + protein coding gene predicted pseudogene 7879
Tssr46130 5 43913146 to 43913151 5 + TSS region transcription start site region 46130
Gm7882 5 43916692 to 43918223 1531 + pseudogene predicted gene 7882
D5Dmo7 5 43943064 to 43943223 159 DNA segment DNA segment, Chr 5, David Ornitz 7
Gm5292 5 43943903 to 43944482 579 - pseudogene predicted gene 5292
Cpgi15834 5 43948064 to 43948391 327 CpG island CpG island 15834
Gm43183 5 43948116 to 43948662 546 + unclassified gene predicted gene 43183
Gm43184 5 43948120 to 43948661 541 - unclassified gene predicted gene 43184
Tssr50873 5 43948313 to 43948327 14 - TSS region transcription start site region 50873
Tssr46131 5 43948707 to 43948712 5 + TSS region transcription start site region 46131
D5Mit108 5 43953653 to 43953803 150 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 108
Fgfbp1 5 43978858 to 43981779 2921 - protein coding gene fibroblast growth factor binding protein 1
Tssr50874 5 43981757 to 43981773 16 - TSS region transcription start site region 50874
Tssr50875 5 43981782 to 43981794 12 - TSS region transcription start site region 50875
Tssr50876 5 43981800 to 43981809 9 - TSS region transcription start site region 50876
Prom1 5 43993620 to 44102032 108412 - protein coding gene prominin 1
Tssr50877 5 44038829 to 44038839 10 - TSS region transcription start site region 50877
Cd8ts1 5 44058006 to 44058109 103 QTL CD8 T cell subset 1
D5Mit79 5 44058006 to 44058109 103 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 79
Gm42716 5 44068198 to 44090854 22656 - unclassified non-coding RNA gene predicted gene 42716
Tssr50878 5 44073761 to 44073784 23 - TSS region transcription start site region 50878
Tssr1474 5 44073787 to 44073798 11 - TSS region transcription start site region 1474
Tssr50879 5 44089541 to 44089556 15 - TSS region transcription start site region 50879
Tssr50880 5 44099188 to 44099194 6 - TSS region transcription start site region 50880
Tssr50881 5 44099195 to 44099217 22 - TSS region transcription start site region 50881
Tssr50882 5 44099220 to 44099237 17 - TSS region transcription start site region 50882
2010320H13Rik 5 44099654 to 44100479 825 unclassified non-coding RNA gene RIKEN cDNA 2010320H13 gene
Gm16401 5 44100442 to 44102515 2073 + antisense lncRNA gene predicted gene 16401
Cpgi15835 5 44100451 to 44101704 1253 CpG island CpG island 15835
Tssr50883 5 44101542 to 44101560 18 - TSS region transcription start site region 50883
Tssr50884 5 44101668 to 44101745 77 - TSS region transcription start site region 50884
Tssr50885 5 44101951 to 44101965 14 - TSS region transcription start site region 50885
Tssr50886 5 44102046 to 44102061 15 - TSS region transcription start site region 50886
Gm42966 5 44105849 to 44107539 1690 + unclassified gene predicted gene 42966
Gm35900 5 44108374 to 44133962 25588 - lncRNA gene predicted gene, 35900
D5Mit297 5 44109009 to 44109133 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 297