Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:43260746-43870836

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpeb2 5 43233170 to 43289724 56554 + protein coding gene cytoplasmic polyadenylation element binding protein 2
6030400A10Rik 5 43265157 to 43266368 1211 + unclassified gene RIKEN cDNA 6030400A10 gene
Gm43020 5 43353047 to 43355259 2212 - lincRNA gene predicted gene 43020
Gm43699 5 43376447 to 43379637 3190 + lincRNA gene predicted gene 43699
Gm43021 5 43470692 to 43474853 4161 + lincRNA gene predicted gene 43021
Tssr46087 5 43515476 to 43515485 9 + TSS region transcription start site region 46087
Tssr46088 5 43515513 to 43515534 21 + TSS region transcription start site region 46088
C1qtnf7 5 43515538 to 43618803 103265 + protein coding gene C1q and tumor necrosis factor related protein 7
Tssr46089 5 43515751 to 43515794 43 + TSS region transcription start site region 46089
Tssr46090 5 43515806 to 43515818 12 + TSS region transcription start site region 46090
Tssr46091 5 43515921 to 43515930 9 + TSS region transcription start site region 46091
Gm43022 5 43528626 to 43532893 4267 + unclassified gene predicted gene 43022
Gm15866 5 43555746 to 43575836 20090 - antisense lncRNA gene predicted gene 15866
Gm43023 5 43575821 to 43577926 2105 + unclassified gene predicted gene 43023
Tssr46092 5 43662373 to 43662384 11 + TSS region transcription start site region 46092
Cc2d2a 5 43662373 to 43740975 78602 + protein coding gene coiled-coil and C2 domain containing 2A
Tssr46093 5 43662386 to 43662406 20 + TSS region transcription start site region 46093
Tssr46094 5 43665449 to 43665463 14 + TSS region transcription start site region 46094
Gm35762 5 43670560 to 43671943 1383 - lncRNA gene predicted gene, 35762
Tssr1472 5 43672289 to 43672300 11 + TSS region transcription start site region 1472
Tssr46095 5 43672304 to 43672326 22 + TSS region transcription start site region 46095
Tssr46096 5 43672329 to 43672355 26 + TSS region transcription start site region 46096
Tssr46097 5 43711568 to 43711574 6 + TSS region transcription start site region 46097
Fbxl5 5 43744618 to 43782149 37531 - protein coding gene F-box and leucine-rich repeat protein 5
Tssr50859 5 43749494 to 43749502 8 - TSS region transcription start site region 50859
Gm42462 5 43752909 to 43754271 1362 - unclassified gene predicted gene 42462
Cpgi15831 5 43781413 to 43782861 1448 CpG island CpG island 15831
Tssr50860 5 43782049 to 43782060 11 - TSS region transcription start site region 50860
Tssr50861 5 43782063 to 43782085 22 - TSS region transcription start site region 50861
Tssr50862 5 43782086 to 43782143 57 - TSS region transcription start site region 50862
Gm43182 5 43782243 to 43784770 2527 + unclassified gene predicted gene 43182
Gm43181 5 43784046 to 43786117 2071 - unclassified gene predicted gene 43181
Tssr50863 5 43784768 to 43784770 2 - TSS region transcription start site region 50863
Tssr50864 5 43786107 to 43786123 16 - TSS region transcription start site region 50864
Tssr46098 5 43803629 to 43803632 3 + TSS region transcription start site region 46098
Gm42555 5 43807705 to 43808743 1038 - lincRNA gene predicted gene 42555
Cpgi15832 5 43807875 to 43808328 453 CpG island CpG island 15832
Tssr46099 5 43808005 to 43808010 5 + TSS region transcription start site region 46099
D5Dmo8 5 43818633 to 43818764 131 DNA segment DNA segment, Chr 5, David Ornitz 8
Tssr46100 5 43818876 to 43818892 16 + TSS region transcription start site region 46100
Bst1 5 43818879 to 43843468 24589 + protein coding gene bone marrow stromal cell antigen 1
Tssr46101 5 43818899 to 43818928 29 + TSS region transcription start site region 46101
Tssr46102 5 43818939 to 43818954 15 + TSS region transcription start site region 46102
D5Jcs608 5 43820092 to 43820253 161 DNA segment DNA segment, Chr 5, John C. Schimenti 608
Tssr50865 5 43821778 to 43821799 21 - TSS region transcription start site region 50865
Tssr46103 5 43842117 to 43842138 21 + TSS region transcription start site region 46103
Tssr46104 5 43842965 to 43842980 15 + TSS region transcription start site region 46104
Tssr46105 5 43854368 to 43854398 30 + TSS region transcription start site region 46105
Tssr46106 5 43856117 to 43856154 37 + TSS region transcription start site region 46106
Tssr50866 5 43867814 to 43867826 12 - TSS region transcription start site region 50866
Tssr46107 5 43868532 to 43868546 14 + TSS region transcription start site region 46107
Tssr46108 5 43868653 to 43868666 13 + TSS region transcription start site region 46108
Tssr50867 5 43868687 to 43868699 12 - TSS region transcription start site region 50867
Tssr50868 5 43868748 to 43868762 14 - TSS region transcription start site region 50868
Tssr46109 5 43868802 to 43868866 64 + TSS region transcription start site region 46109
Cd38 5 43868809 to 43912374 43565 + protein coding gene CD38 antigen
Cpgi15833 5 43868959 to 43869293 334 CpG island CpG island 15833
Tssr50869 5 43869128 to 43869139 11 - TSS region transcription start site region 50869
Tssr50870 5 43869460 to 43869492 32 - TSS region transcription start site region 50870
Tssr46110 5 43869791 to 43869796 5 + TSS region transcription start site region 46110