Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:4325856-10197399

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349 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr45085 5 4333448 to 4333452 4 + TSS region transcription start site region 45085
Tssr45086 5 4344708 to 4344713 5 + TSS region transcription start site region 45086
D5Mit249 5 4586369 to 4586511 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 249
Fzd1 5 4753839 to 4758035 4196 - protein coding gene frizzled class receptor 1
Cpgi15517 5 4755765 to 4758387 2622 CpG island CpG island 15517
Tssr50008 5 4757797 to 4757806 9 - TSS region transcription start site region 50008
Tssr50009 5 4757875 to 4757887 12 - TSS region transcription start site region 50009
Tssr50010 5 4757908 to 4757920 12 - TSS region transcription start site region 50010
Tssr50011 5 4757926 to 4757936 10 - TSS region transcription start site region 50011
Tssr50012 5 4757977 to 4757995 18 - TSS region transcription start site region 50012
Tssr50013 5 4757999 to 4758022 23 - TSS region transcription start site region 50013
Tssr50014 5 4758026 to 4758045 19 - TSS region transcription start site region 50014
Gm15750 5 4764834 to 4765665 831 + pseudogene predicted gene 15750
Tssr50015 5 4779936 to 4779937 1 - TSS region transcription start site region 50015
Gm42744 5 4784753 to 4799094 14341 - lincRNA gene predicted gene 42744
Tssr50016 5 4799092 to 4799097 5 - TSS region transcription start site region 50016
Gm44483 5 4802457 to 4802553 96 + miRNA gene predicted gene, 44483
Cdk14 5 4803384 to 5380251 576867 - protein coding gene cyclin-dependent kinase 14
Tssr50017 5 4803633 to 4803638 5 - TSS region transcription start site region 50017
Tssr50018 5 4804528 to 4804545 17 - TSS region transcription start site region 50018
Gm43112 5 4819506 to 4822627 3121 - sense intronic lncRNA gene predicted gene 43112
Gm43113 5 4826340 to 4828093 1753 - sense intronic lncRNA gene predicted gene 43113
Tssr50019 5 4832692 to 4832728 36 - TSS region transcription start site region 50019
Gm25037 5 4854314 to 4854423 109 - miRNA gene predicted gene, 25037
Gm43111 5 4868348 to 4870266 1918 - sense intronic lncRNA gene predicted gene 43111
Tssr50020 5 4875680 to 4875691 11 - TSS region transcription start site region 50020
D5Mit346.1 5 4879428 to 4879555 127 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 346.1
Eye1 5 4879531 to 4879650 119 QTL eye weight 1
D5Mit346 5 4879531 to 4879650 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 346
Gm22897 5 4985111 to 4985237 126 - snoRNA gene predicted gene, 22897
D5Mit343.2 5 5005213 to 5005364 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 343.2
Tssr50021 5 5076242 to 5076276 34 - TSS region transcription start site region 50021
Tssr50022 5 5108443 to 5108447 4 - TSS region transcription start site region 50022
Tssr50023 5 5120018 to 5120022 4 - TSS region transcription start site region 50023
Gm43623 5 5137445 to 5140107 2662 - unclassified non-coding RNA gene predicted gene 43623
Gm43577 5 5154571 to 5157914 3343 - sense intronic lncRNA gene predicted gene 43577
Gm10484 5 5170394 to 5175152 4758 - sense intronic lncRNA gene predicted gene 10484
D5Mit49 5 5172736 to 5172867 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 49
Tssr50024 5 5215864 to 5215868 4 - TSS region transcription start site region 50024
Tssr50025 5 5262109 to 5262132 23 - TSS region transcription start site region 50025
Tssr50026 5 5265224 to 5265234 10 - TSS region transcription start site region 50026
Tssr50027 5 5265669 to 5265683 14 - TSS region transcription start site region 50027
Tssr50028 5 5265696 to 5265697 1 - TSS region transcription start site region 50028
Tssr50029 5 5265699 to 5265720 21 - TSS region transcription start site region 50029
Tssr50030 5 5265723 to 5265728 5 - TSS region transcription start site region 50030
Tssr50031 5 5265790 to 5265806 16 - TSS region transcription start site region 50031
Tssr50032 5 5265967 to 5266031 64 - TSS region transcription start site region 50032
Tssr50033 5 5266038 to 5266083 45 - TSS region transcription start site region 50033
Gm43727 5 5304356 to 5307002 2646 - sense intronic lncRNA gene predicted gene 43727
Gm43728 5 5309002 to 5311623 2621 - sense intronic lncRNA gene predicted gene 43728
Tssr50034 5 5314581 to 5314592 11 - TSS region transcription start site region 50034
Tssr50035 5 5314593 to 5314603 10 - TSS region transcription start site region 50035
Tssr50036 5 5314611 to 5314624 13 - TSS region transcription start site region 50036
D5Mit344 5 5319806 to 5319918 112 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 344
Tssr50037 5 5328144 to 5328181 37 - TSS region transcription start site region 50037
Tssr50038 5 5346610 to 5346628 18 - TSS region transcription start site region 50038
Tssr50039 5 5353794 to 5353797 3 - TSS region transcription start site region 50039
Tssr50040 5 5365826 to 5365827 1 - TSS region transcription start site region 50040
Tssr50041 5 5367130 to 5367154 24 - TSS region transcription start site region 50041
Gm30151 5 5368774 to 5373325 4551 + lncRNA gene predicted gene, 30151
Tssr50042 5 5374766 to 5374780 14 - TSS region transcription start site region 50042
Cpgi15518 5 5379694 to 5381089 1395 CpG island CpG island 15518
Tssr50043 5 5380136 to 5380141 5 - TSS region transcription start site region 50043
Tssr50044 5 5380154 to 5380169 15 - TSS region transcription start site region 50044
Tssr50045 5 5380185 to 5380229 44 - TSS region transcription start site region 50045
Tssr50046 5 5380545 to 5380556 11 - TSS region transcription start site region 50046
Tssr50047 5 5380607 to 5380682 75 - TSS region transcription start site region 50047
Gm30267 5 5380777 to 5383141 2364 + lncRNA gene predicted gene, 30267
Tssr45087 5 5420057 to 5420069 12 + TSS region transcription start site region 45087
Tssr50048 5 5420244 to 5420262 18 - TSS region transcription start site region 50048
Tssr1416 5 5420267 to 5420320 53 - TSS region transcription start site region 1416
Tssr45088 5 5421719 to 5421722 3 + TSS region transcription start site region 45088
1700015F17Rik 5 5437827 to 5479143 41316 - protein coding gene RIKEN cDNA 1700015F17 gene
Tssr50049 5 5479040 to 5479060 20 - TSS region transcription start site region 50049
Tssr50050 5 5479063 to 5479075 12 - TSS region transcription start site region 50050
Tssr50051 5 5479077 to 5479107 30 - TSS region transcription start site region 50051
Tssr50052 5 5479120 to 5479136 16 - TSS region transcription start site region 50052
Gm30325 5 5479160 to 5494070 14910 + lncRNA gene predicted gene, 30325
Tssr45089 5 5479177 to 5479189 12 + TSS region transcription start site region 45089
Tssr45090 5 5481551 to 5481554 3 + TSS region transcription start site region 45090
Tssr45091 5 5504816 to 5504824 8 + TSS region transcription start site region 45091
Cldn12 5 5505015 to 5514976 9961 - protein coding gene claudin 12
Cpgi15519 5 5508138 to 5508377 239 CpG island CpG island 15519
Cpgi15520 5 5514093 to 5515030 937 CpG island CpG island 15520
Tssr50053 5 5514808 to 5514830 22 - TSS region transcription start site region 50053
Tssr50054 5 5514836 to 5514858 22 - TSS region transcription start site region 50054
Tssr50055 5 5514877 to 5514891 14 - TSS region transcription start site region 50055
Tssr50056 5 5514906 to 5514918 12 - TSS region transcription start site region 50056
Gtpbp10 5 5537454 to 5559538 22084 - protein coding gene GTP-binding protein 10 (putative)
Cpgi15521 5 5559176 to 5559804 628 CpG island CpG island 15521
Tssr50057 5 5559501 to 5559517 16 - TSS region transcription start site region 50057
Tssr50058 5 5559521 to 5559545 24 - TSS region transcription start site region 50058
Gm30652 5 5567328 to 5567757 429 + pseudogene predicted gene, 30652
Gm8773 5 5573799 to 5576203 2404 + lincRNA gene predicted gene 8773
Cpgi15522 5 5573814 to 5574328 514 CpG island CpG island 15522
Tssr45092 5 5573994 to 5574013 19 + TSS region transcription start site region 45092
Cfap69 5 5579278 to 5664239 84961 - protein coding gene cilia and flagella associated protein 69
n-TUtca1 5 5627681 to 5627751 70 + tRNA gene nuclear encoded tRNA selenocysteine 1 (anticodon TCA)
Tssr1417 5 5644794 to 5644795 1 + TSS region transcription start site region 1417
Tssr50059 5 5663207 to 5663221 14 - TSS region transcription start site region 50059
Tssr50060 5 5663263 to 5663294 31 - TSS region transcription start site region 50060
Cpgi15523 5 5663755 to 5664386 631 CpG island CpG island 15523
Tssr50061 5 5664176 to 5664181 5 - TSS region transcription start site region 50061
Tssr50062 5 5664183 to 5664192 9 - TSS region transcription start site region 50062
Tssr50063 5 5664196 to 5664253 57 - TSS region transcription start site region 50063
Gm40262 5 5664289 to 5716533 52244 + lncRNA gene predicted gene, 40262
Steap2 5 5664829 to 5694568 29739 - protein coding gene six transmembrane epithelial antigen of prostate 2
D5Mit417 5 5692220 to 5692365 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 417
Cpgi15524 5 5693614 to 5694706 1092 CpG island CpG island 15524
Tssr50064 5 5694024 to 5694109 85 - TSS region transcription start site region 50064
Tssr50065 5 5694269 to 5694312 43 - TSS region transcription start site region 50065
Tssr50066 5 5694436 to 5694447 11 - TSS region transcription start site region 50066
Tssr50067 5 5694480 to 5694491 11 - TSS region transcription start site region 50067
Tssr50068 5 5694499 to 5694539 40 - TSS region transcription start site region 50068
Tssr50069 5 5694559 to 5694581 22 - TSS region transcription start site region 50069
Gm43219 5 5696858 to 5698794 1936 + unclassified gene predicted gene 43219
Steap1 5 5736322 to 5749317 12995 - protein coding gene six transmembrane epithelial antigen of the prostate 1
Gm46900 5 5743074 to 5749621 6547 + protein coding gene predicted gene, 46900
Cpgi15525 5 5748778 to 5749881 1103 CpG island CpG island 15525
Tssr50070 5 5749285 to 5749315 30 - TSS region transcription start site region 50070
Tssr50071 5 5749317 to 5749340 23 - TSS region transcription start site region 50071
Tssr45093 5 5754765 to 5754768 3 + TSS region transcription start site region 45093
Gm26825 5 5781530 to 5783636 2106 + lincRNA gene predicted gene, 26825
Gm15459 5 5781615 to 5783555 1940 - pseudogene predicted gene 15459
Tssr50072 5 5783443 to 5783477 34 - TSS region transcription start site region 50072
Tssr50073 5 5783629 to 5783638 9 - TSS region transcription start site region 50073
Gm38697 5 5798197 to 5799942 1745 + pseudogene predicted gene, 38697
Gm5984 5 5806872 to 5810573 3701 + lncRNA gene predicted gene 5984
Tssr45094 5 5890985 to 5890986 1 + TSS region transcription start site region 45094
Gm23838 5 6014863 to 6015024 161 - snRNA gene predicted gene, 23838
Tssr1418 5 6104286 to 6104287 1 - TSS region transcription start site region 1418
Gm42718 5 6311311 to 6313991 2680 - pseudogene predicted gene 42718
Gm42719 5 6358836 to 6359190 354 + pseudogene predicted gene 42719
D5Mit385 5 6409897 to 6409998 101 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 385
Gm24686 5 6410438 to 6410530 92 + snRNA gene predicted gene, 24686
Gm40263 5 6414399 to 6427065 12666 + lincRNA gene predicted gene, 40263
Gm3203 5 6426844 to 6429232 2388 - pseudogene predicted gene 3203
Bwq13 5 6556176 to 6556323 147 QTL body weight QTL 13
D5Mit123 5 6556176 to 6556323 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 123
Gm43324 5 6646520 to 6646808 288 - pseudogene predicted gene 43324
Gm5714 5 6748894 to 6749448 554 - pseudogene predicted gene 5714
Zfp804b 5 6769030 to 7344378 575348 - protein coding gene zinc finger protein 804B
Tssr1419 5 6818536 to 6818540 4 + TSS region transcription start site region 1419
Tssr45095 5 6951726 to 6951734 8 + TSS region transcription start site region 45095
Gm24525 5 7177706 to 7177856 150 - snRNA gene predicted gene, 24525
Cpgi15526 5 7179231 to 7179594 363 CpG island CpG island 15526
Tssr45096 5 7179299 to 7179302 3 + TSS region transcription start site region 45096
Tubb4b-ps1 5 7179365 to 7180700 1335 + pseudogene tubulin, beta 4B class IVB, pseudogene 1
Tssr1420 5 7180030 to 7180050 20 + TSS region transcription start site region 1420
Tssr50074 5 7186422 to 7186428 6 - TSS region transcription start site region 50074
Gm42598 5 7233401 to 7235837 2436 - unclassified gene predicted gene 42598
Gm42597 5 7260856 to 7262399 1543 - unclassified gene predicted gene 42597
Gm43841 5 7276324 to 7276909 585 + pseudogene predicted gene 43841
Tssr45097 5 7304113 to 7304124 11 + TSS region transcription start site region 45097
Tex47 5 7304119 to 7311491 7372 + protein coding gene testis expressed 47
Tssr45098 5 7304128 to 7304152 24 + TSS region transcription start site region 45098
D5Mit145 5 7333014 to 7333165 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 145
Cpgi15527 5 7344227 to 7345111 884 CpG island CpG island 15527
Gm4960 5 7399362 to 7400362 1000 - pseudogene predicted gene 4960
Tssr50075 5 7800888 to 7800890 2 - TSS region transcription start site region 50075
Gm8802 5 7857108 to 7857847 739 + pseudogene predicted gene 8802
Gm22196 5 7888685 to 7888793 108 + miRNA gene predicted gene, 22196
Gm43478 5 7923833 to 7924124 291 + pseudogene predicted gene 43478
Gm30835 5 7945234 to 7960337 15103 - lincRNA gene predicted gene, 30835
Tssr45099 5 7960259 to 7960288 29 + TSS region transcription start site region 45099
Cpgi15528 5 7960269 to 7960556 287 CpG island CpG island 15528
Tssr45100 5 7960445 to 7960464 19 + TSS region transcription start site region 45100
Steap4 5 7960472 to 7982213 21741 + protein coding gene STEAP family member 4
Tssr45101 5 7961085 to 7961101 16 + TSS region transcription start site region 45101
Cpgi15529 5 7971599 to 7971783 184 CpG island CpG island 15529
Tssr45102 5 7972470 to 7972501 31 + TSS region transcription start site region 45102
Gm15731 5 8038795 to 8040180 1385 - antisense lncRNA gene predicted gene 15731
Tssr45103 5 8046077 to 8046078 1 + TSS region transcription start site region 45103
Sri 5 8046078 to 8069314 23236 + protein coding gene sorcin
Tssr45104 5 8046122 to 8046152 30 + TSS region transcription start site region 45104
Tssr45105 5 8046162 to 8046184 22 + TSS region transcription start site region 45105
Tssr45106 5 8055085 to 8055114 29 + TSS region transcription start site region 45106
Gm15730 5 8055139 to 8055553 414 + pseudogene predicted gene 15730
Cpgi15530 5 8056198 to 8056908 710 CpG island CpG island 15530
Tssr45107 5 8056536 to 8056551 15 + TSS region transcription start site region 45107
Tssr45108 5 8056555 to 8056585 30 + TSS region transcription start site region 45108
Tssr45109 5 8065119 to 8065135 16 + TSS region transcription start site region 45109
Tssr45110 5 8065183 to 8065194 11 + TSS region transcription start site region 45110
Tssr45111 5 8065197 to 8065254 57 + TSS region transcription start site region 45111
Tssr45112 5 8067629 to 8067652 23 + TSS region transcription start site region 45112
Tssr50076 5 8067644 to 8067688 44 - TSS region transcription start site region 50076
Tssr45113 5 8068424 to 8068440 16 + TSS region transcription start site region 45113
Tssr45114 5 8068443 to 8068463 20 + TSS region transcription start site region 45114
Tssr45115 5 8068656 to 8068678 22 + TSS region transcription start site region 45115
Adam22 5 8072352 to 8368160 295808 - protein coding gene a disintegrin and metallopeptidase domain 22
Tssr50077 5 8078493 to 8078497 4 - TSS region transcription start site region 50077
Tssr50078 5 8162155 to 8162159 4 - TSS region transcription start site region 50078
Gm21759 5 8179636 to 8181463 1827 + pseudogene predicted gene, 21759
Gm24196 5 8203866 to 8203975 109 - miRNA gene predicted gene, 24196
Gm23993 5 8242723 to 8242866 143 + snoRNA gene predicted gene, 23993
Gm18037 5 8316032 to 8316559 527 + pseudogene predicted gene, 18037
Gm42490 5 8327332 to 8329395 2063 - unclassified gene predicted gene 42490
Tssr50079 5 8353481 to 8353487 6 - TSS region transcription start site region 50079
Cpgi15531 5 8366993 to 8367509 516 CpG island CpG island 15531
Cpgi15532 5 8367793 to 8368457 664 CpG island CpG island 15532