Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:42696698-43806713

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5554 5 42963404 to 42964609 1205 - pseudogene predicted gene 5554
D5Mit78a 5 43025477 to 43025719 242 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 78a
D5Mit78b 5 43025477 to 43025599 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 78b
Gm43700 5 43026548 to 43038236 11688 - lincRNA gene predicted gene 43700
Gm42711 5 43039737 to 43044061 4324 - lincRNA gene predicted gene 42711
Tssr50856 5 43044044 to 43044070 26 - TSS region transcription start site region 50856
Gm42553 5 43059255 to 43060883 1628 + unclassified gene predicted gene 42553
Tssr46074 5 43062780 to 43062802 22 + TSS region transcription start site region 46074
Tssr46075 5 43103975 to 43103987 12 + TSS region transcription start site region 46075
Gm42552 5 43143831 to 43148327 4496 - unclassified gene predicted gene 42552
Gm7854 5 43151686 to 43235354 83668 - antisense lncRNA gene predicted gene 7854
Gm46911 5 43208701 to 43216243 7542 + protein coding gene predicted gene, 46911
Cpgi15830 5 43232441 to 43235578 3137 CpG island CpG island 15830
Tssr50857 5 43232777 to 43232846 69 - TSS region transcription start site region 50857
Cpeb2 5 43233170 to 43289724 56554 + protein coding gene cytoplasmic polyadenylation element binding protein 2
Tssr46076 5 43233217 to 43233237 20 + TSS region transcription start site region 46076
Tssr46077 5 43233243 to 43233259 16 + TSS region transcription start site region 46077
Tssr46078 5 43233485 to 43233491 6 + TSS region transcription start site region 46078
Tssr46079 5 43233677 to 43233685 8 + TSS region transcription start site region 46079
Tssr46080 5 43233694 to 43233703 9 + TSS region transcription start site region 46080
Tssr46081 5 43233714 to 43233717 3 + TSS region transcription start site region 46081
Tssr46082 5 43233732 to 43233741 9 + TSS region transcription start site region 46082
Tssr50858 5 43233833 to 43233839 6 - TSS region transcription start site region 50858
Tssr46083 5 43233886 to 43233895 9 + TSS region transcription start site region 46083
Tssr46084 5 43233928 to 43233951 23 + TSS region transcription start site region 46084
Tssr46085 5 43233962 to 43233979 17 + TSS region transcription start site region 46085
Gm42551 5 43248185 to 43249757 1572 + unclassified gene predicted gene 42551
Tssr46086 5 43251698 to 43251713 15 + TSS region transcription start site region 46086
6030400A10Rik 5 43265157 to 43266368 1211 + unclassified gene RIKEN cDNA 6030400A10 gene
Gm43020 5 43353047 to 43355259 2212 - lincRNA gene predicted gene 43020
Gm43699 5 43376447 to 43379637 3190 + lincRNA gene predicted gene 43699
Gm43021 5 43470692 to 43474853 4161 + lincRNA gene predicted gene 43021
Tssr46087 5 43515476 to 43515485 9 + TSS region transcription start site region 46087
Tssr46088 5 43515513 to 43515534 21 + TSS region transcription start site region 46088
C1qtnf7 5 43515538 to 43618803 103265 + protein coding gene C1q and tumor necrosis factor related protein 7
Tssr46089 5 43515751 to 43515794 43 + TSS region transcription start site region 46089
Tssr46090 5 43515806 to 43515818 12 + TSS region transcription start site region 46090
Tssr46091 5 43515921 to 43515930 9 + TSS region transcription start site region 46091
Gm43022 5 43528626 to 43532893 4267 + unclassified gene predicted gene 43022
Gm15866 5 43555746 to 43575836 20090 - antisense lncRNA gene predicted gene 15866
Gm43023 5 43575821 to 43577926 2105 + unclassified gene predicted gene 43023
Tssr46092 5 43662373 to 43662384 11 + TSS region transcription start site region 46092
Cc2d2a 5 43662373 to 43740975 78602 + protein coding gene coiled-coil and C2 domain containing 2A
Tssr46093 5 43662386 to 43662406 20 + TSS region transcription start site region 46093
Tssr46094 5 43665449 to 43665463 14 + TSS region transcription start site region 46094
Gm35762 5 43670560 to 43671943 1383 - lncRNA gene predicted gene, 35762
Tssr1472 5 43672289 to 43672300 11 + TSS region transcription start site region 1472
Tssr46095 5 43672304 to 43672326 22 + TSS region transcription start site region 46095
Tssr46096 5 43672329 to 43672355 26 + TSS region transcription start site region 46096
Tssr46097 5 43711568 to 43711574 6 + TSS region transcription start site region 46097
Fbxl5 5 43744618 to 43782149 37531 - protein coding gene F-box and leucine-rich repeat protein 5
Tssr50859 5 43749494 to 43749502 8 - TSS region transcription start site region 50859
Gm42462 5 43752909 to 43754271 1362 - unclassified gene predicted gene 42462
Cpgi15831 5 43781413 to 43782861 1448 CpG island CpG island 15831
Tssr50860 5 43782049 to 43782060 11 - TSS region transcription start site region 50860
Tssr50861 5 43782063 to 43782085 22 - TSS region transcription start site region 50861
Tssr50862 5 43782086 to 43782143 57 - TSS region transcription start site region 50862
Gm43182 5 43782243 to 43784770 2527 + unclassified gene predicted gene 43182
Gm43181 5 43784046 to 43786117 2071 - unclassified gene predicted gene 43181
Tssr50863 5 43784768 to 43784770 2 - TSS region transcription start site region 50863
Tssr50864 5 43786107 to 43786123 16 - TSS region transcription start site region 50864
Tssr46098 5 43803629 to 43803632 3 + TSS region transcription start site region 46098