Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:4172797-5342806

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mterf1b 5 4192367 to 4197651 5284 + protein coding gene mitochondrial transcription termination factor 1b
D5Mit345 5 4223455 to 4223552 97 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 345
Pbwg14 5 4223455 to 4223552 97 QTL postnatal body weight growth 14
D5Mit193 5 4232826 to 4232961 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 193
D5Mit331 5 4246959 to 4247065 106 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 331
Gm40261 5 4273277 to 4317978 44701 + lncRNA gene predicted gene, 40261
Tssr45085 5 4333448 to 4333452 4 + TSS region transcription start site region 45085
Tssr45086 5 4344708 to 4344713 5 + TSS region transcription start site region 45086
D5Mit249 5 4586369 to 4586511 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 249
Fzd1 5 4753839 to 4758035 4196 - protein coding gene frizzled class receptor 1
Cpgi15517 5 4755765 to 4758387 2622 CpG island CpG island 15517
Tssr50008 5 4757797 to 4757806 9 - TSS region transcription start site region 50008
Tssr50009 5 4757875 to 4757887 12 - TSS region transcription start site region 50009
Tssr50010 5 4757908 to 4757920 12 - TSS region transcription start site region 50010
Tssr50011 5 4757926 to 4757936 10 - TSS region transcription start site region 50011
Tssr50012 5 4757977 to 4757995 18 - TSS region transcription start site region 50012
Tssr50013 5 4757999 to 4758022 23 - TSS region transcription start site region 50013
Tssr50014 5 4758026 to 4758045 19 - TSS region transcription start site region 50014
Gm15750 5 4764834 to 4765665 831 + pseudogene predicted gene 15750
Tssr50015 5 4779936 to 4779937 1 - TSS region transcription start site region 50015
Gm42744 5 4784753 to 4799094 14341 - lincRNA gene predicted gene 42744
Tssr50016 5 4799092 to 4799097 5 - TSS region transcription start site region 50016
Gm44483 5 4802457 to 4802553 96 + miRNA gene predicted gene, 44483
Cdk14 5 4803384 to 5380251 576867 - protein coding gene cyclin-dependent kinase 14
Tssr50017 5 4803633 to 4803638 5 - TSS region transcription start site region 50017
Tssr50018 5 4804528 to 4804545 17 - TSS region transcription start site region 50018
Gm43112 5 4819506 to 4822627 3121 - sense intronic lncRNA gene predicted gene 43112
Gm43113 5 4826340 to 4828093 1753 - sense intronic lncRNA gene predicted gene 43113
Tssr50019 5 4832692 to 4832728 36 - TSS region transcription start site region 50019
Gm25037 5 4854314 to 4854423 109 - miRNA gene predicted gene, 25037
Gm43111 5 4868348 to 4870266 1918 - sense intronic lncRNA gene predicted gene 43111
Tssr50020 5 4875680 to 4875691 11 - TSS region transcription start site region 50020
D5Mit346.1 5 4879428 to 4879555 127 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 346.1
Eye1 5 4879531 to 4879650 119 QTL eye weight 1
D5Mit346 5 4879531 to 4879650 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 346
Gm22897 5 4985111 to 4985237 126 - snoRNA gene predicted gene, 22897
D5Mit343.2 5 5005213 to 5005364 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 343.2
Tssr50021 5 5076242 to 5076276 34 - TSS region transcription start site region 50021
Tssr50022 5 5108443 to 5108447 4 - TSS region transcription start site region 50022
Tssr50023 5 5120018 to 5120022 4 - TSS region transcription start site region 50023
Gm43623 5 5137445 to 5140107 2662 - unclassified non-coding RNA gene predicted gene 43623
Gm43577 5 5154571 to 5157914 3343 - sense intronic lncRNA gene predicted gene 43577
Gm10484 5 5170394 to 5175152 4758 - sense intronic lncRNA gene predicted gene 10484
D5Mit49 5 5172736 to 5172867 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 49
Tssr50024 5 5215864 to 5215868 4 - TSS region transcription start site region 50024
Tssr50025 5 5262109 to 5262132 23 - TSS region transcription start site region 50025
Tssr50026 5 5265224 to 5265234 10 - TSS region transcription start site region 50026
Tssr50027 5 5265669 to 5265683 14 - TSS region transcription start site region 50027
Tssr50028 5 5265696 to 5265697 1 - TSS region transcription start site region 50028
Tssr50029 5 5265699 to 5265720 21 - TSS region transcription start site region 50029
Tssr50030 5 5265723 to 5265728 5 - TSS region transcription start site region 50030
Tssr50031 5 5265790 to 5265806 16 - TSS region transcription start site region 50031
Tssr50032 5 5265967 to 5266031 64 - TSS region transcription start site region 50032
Tssr50033 5 5266038 to 5266083 45 - TSS region transcription start site region 50033
Gm43727 5 5304356 to 5307002 2646 - sense intronic lncRNA gene predicted gene 43727
Gm43728 5 5309002 to 5311623 2621 - sense intronic lncRNA gene predicted gene 43728
Tssr50034 5 5314581 to 5314592 11 - TSS region transcription start site region 50034
Tssr50035 5 5314593 to 5314603 10 - TSS region transcription start site region 50035
Tssr50036 5 5314611 to 5314624 13 - TSS region transcription start site region 50036
D5Mit344 5 5319806 to 5319918 112 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 344
Tssr50037 5 5328144 to 5328181 37 - TSS region transcription start site region 50037