MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:41712653-41812664

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19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm19004	5	41717092 to 41717625	533	+	pseudogene	predicted gene, 19004
Cpgi15823	5	41754831 to 41754992	161		CpG island	CpG island 15823
Cpgi15824	5	41755486 to 41755878	392		CpG island	CpG island 15824
Cpgi15825	5	41761214 to 41762414	1200		CpG island	CpG island 15825
Nkx3-2	5	41761483 to 41764220	2737	-	protein coding gene	NK3 homeobox 2
Gm46910	5	41762187 to 41765085	2898	+	lncRNA gene	predicted gene, 46910
Tssr46071	5	41762653 to 41762664	11	+	TSS region	transcription start site region 46071
Cpgi15826	5	41763082 to 41764711	1629		CpG island	CpG island 15826
Tssr50844	5	41764038 to 41764042	4	-	TSS region	transcription start site region 50844
Tssr50845	5	41764493 to 41764494	1	-	TSS region	transcription start site region 50845
Tssr50846	5	41764549 to 41764561	12	-	TSS region	transcription start site region 50846
Cpgi15827	5	41766706 to 41767833	1127		CpG island	CpG island 15827
Tssr46072	5	41767659 to 41767663	4	+	TSS region	transcription start site region 46072
Cpgi15828	5	41768427 to 41768623	196		CpG island	CpG island 15828
D5Mit104	5	41774200 to 41774344	144		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 104
Bod1l	5	41787538 to 41844315	56777	-	protein coding gene	biorientation of chromosomes in cell division 1-like
Tssr50847	5	41799918 to 41799938	20	-	TSS region	transcription start site region 50847
Tssr50848	5	41807195 to 41807227	32	-	TSS region	transcription start site region 50848
Tssr50849	5	41810079 to 41810105	26	-	TSS region	transcription start site region 50849