Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:41249494-46249502

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330 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5D5Mit148-Qdpr)2Jcs 5 31975890 to 45450229 13474339 chromosomal deletion deletion, Chr 5, John C. Schimenti 2
Tssr46068 5 41250606 to 41250607 1 + TSS region transcription start site region 46068
4930519E07Rik 5 41281236 to 41282900 1664 + unclassified gene RIKEN cDNA 4930519E07 gene
Tssr46069 5 41342096 to 41342098 2 + TSS region transcription start site region 46069
Gm4754 5 41342123 to 41342931 808 + pseudogene predicted gene 4754
Gm43806 5 41421576 to 41422044 468 - pseudogene predicted gene 43806
Cpgi15821 5 41556754 to 41557113 359 CpG island CpG island 15821
Gm35380 5 41605819 to 41616325 10506 - lncRNA gene predicted gene, 35380
Rab28 5 41624976 to 41708157 83181 - protein coding gene RAB28, member RAS oncogene family
Tssr50835 5 41636981 to 41636985 4 - TSS region transcription start site region 50835
Tssr50836 5 41684156 to 41684161 5 - TSS region transcription start site region 50836
Tssr50837 5 41701287 to 41701329 42 - TSS region transcription start site region 50837
Tssr50838 5 41706912 to 41706916 4 - TSS region transcription start site region 50838
Cpgi15822 5 41707039 to 41708563 1524 CpG island CpG island 15822
Tssr46070 5 41707170 to 41707178 8 + TSS region transcription start site region 46070
Tssr50839 5 41707417 to 41707429 12 - TSS region transcription start site region 50839
Tssr50840 5 41707670 to 41707681 11 - TSS region transcription start site region 50840
Tssr50841 5 41707969 to 41708014 45 - TSS region transcription start site region 50841
Tssr50842 5 41708118 to 41708129 11 - TSS region transcription start site region 50842
Tssr50843 5 41708135 to 41708170 35 - TSS region transcription start site region 50843
Gm19004 5 41717092 to 41717625 533 + pseudogene predicted gene, 19004
Cpgi15823 5 41754831 to 41754992 161 CpG island CpG island 15823
Cpgi15824 5 41755486 to 41755878 392 CpG island CpG island 15824
Cpgi15825 5 41761214 to 41762414 1200 CpG island CpG island 15825
Nkx3-2 5 41761483 to 41764220 2737 - protein coding gene NK3 homeobox 2
Gm46910 5 41762187 to 41765085 2898 + lncRNA gene predicted gene, 46910
Tssr46071 5 41762653 to 41762664 11 + TSS region transcription start site region 46071
Cpgi15826 5 41763082 to 41764711 1629 CpG island CpG island 15826
Tssr50844 5 41764038 to 41764042 4 - TSS region transcription start site region 50844
Tssr50845 5 41764493 to 41764494 1 - TSS region transcription start site region 50845
Tssr50846 5 41764549 to 41764561 12 - TSS region transcription start site region 50846
Cpgi15827 5 41766706 to 41767833 1127 CpG island CpG island 15827
Tssr46072 5 41767659 to 41767663 4 + TSS region transcription start site region 46072
Cpgi15828 5 41768427 to 41768623 196 CpG island CpG island 15828
D5Mit104 5 41774200 to 41774344 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 104
Bod1l 5 41787538 to 41844315 56777 - protein coding gene biorientation of chromosomes in cell division 1-like
Tssr50847 5 41799918 to 41799938 20 - TSS region transcription start site region 50847
Tssr50848 5 41807195 to 41807227 32 - TSS region transcription start site region 50848
Tssr50849 5 41810079 to 41810105 26 - TSS region transcription start site region 50849
Tssr50850 5 41819007 to 41819024 17 - TSS region transcription start site region 50850
Tssr50851 5 41819383 to 41819391 8 - TSS region transcription start site region 50851
Tssr50852 5 41821438 to 41821461 23 - TSS region transcription start site region 50852
Tssr50853 5 41828837 to 41828850 13 - TSS region transcription start site region 50853
Tssr50854 5 41832565 to 41832587 22 - TSS region transcription start site region 50854
Cpgi15829 5 41843670 to 41844607 937 CpG island CpG island 15829
Tssr50855 5 41844232 to 41844329 97 - TSS region transcription start site region 50855
Gm5298 5 41853310 to 41854201 891 - pseudogene predicted gene 5298
D5Dcr56 5 41878493 to 41878601 108 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 56
Mir6414 5 41891342 to 41891423 81 + miRNA gene microRNA 6414
Gm20156 5 41934397 to 41935672 1275 - pseudogene predicted gene, 20156
Gm40294 5 42052935 to 42057050 4115 + lncRNA gene predicted gene, 40294
Gm16223 5 42067960 to 42216784 148824 + protein coding gene predicted gene 16223
D5Mit196 5 42102112 to 42102217 105 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 196
D5Mit129 5 42131193 to 42131340 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 129
Gm7181 5 42499981 to 42500414 433 - pseudogene predicted gene 7181
Gm40295 5 42513968 to 42525800 11832 - lncRNA gene predicted gene, 40295
Tssr46073 5 42615195 to 42615198 3 + TSS region transcription start site region 46073
Gm5554 5 42963404 to 42964609 1205 - pseudogene predicted gene 5554
D5Mit78b 5 43025477 to 43025599 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 78b
D5Mit78a 5 43025477 to 43025719 242 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 78a
Gm43700 5 43026548 to 43038236 11688 - lincRNA gene predicted gene 43700
Gm42711 5 43039737 to 43044061 4324 - lincRNA gene predicted gene 42711
Tssr50856 5 43044044 to 43044070 26 - TSS region transcription start site region 50856
Gm42553 5 43059255 to 43060883 1628 + unclassified gene predicted gene 42553
Tssr46074 5 43062780 to 43062802 22 + TSS region transcription start site region 46074
Tssr46075 5 43103975 to 43103987 12 + TSS region transcription start site region 46075
Gm42552 5 43143831 to 43148327 4496 - unclassified gene predicted gene 42552
Gm7854 5 43151686 to 43235354 83668 - antisense lncRNA gene predicted gene 7854
Gm46911 5 43208701 to 43216243 7542 + protein coding gene predicted gene, 46911
Cpgi15830 5 43232441 to 43235578 3137 CpG island CpG island 15830
Tssr50857 5 43232777 to 43232846 69 - TSS region transcription start site region 50857
Cpeb2 5 43233170 to 43289724 56554 + protein coding gene cytoplasmic polyadenylation element binding protein 2
Tssr46076 5 43233217 to 43233237 20 + TSS region transcription start site region 46076
Tssr46077 5 43233243 to 43233259 16 + TSS region transcription start site region 46077
Tssr46078 5 43233485 to 43233491 6 + TSS region transcription start site region 46078
Tssr46079 5 43233677 to 43233685 8 + TSS region transcription start site region 46079
Tssr46080 5 43233694 to 43233703 9 + TSS region transcription start site region 46080
Tssr46081 5 43233714 to 43233717 3 + TSS region transcription start site region 46081
Tssr46082 5 43233732 to 43233741 9 + TSS region transcription start site region 46082
Tssr50858 5 43233833 to 43233839 6 - TSS region transcription start site region 50858
Tssr46083 5 43233886 to 43233895 9 + TSS region transcription start site region 46083
Tssr46084 5 43233928 to 43233951 23 + TSS region transcription start site region 46084
Tssr46085 5 43233962 to 43233979 17 + TSS region transcription start site region 46085
Gm42551 5 43248185 to 43249757 1572 + unclassified gene predicted gene 42551
Tssr46086 5 43251698 to 43251713 15 + TSS region transcription start site region 46086
6030400A10Rik 5 43265157 to 43266368 1211 + unclassified gene RIKEN cDNA 6030400A10 gene
Gm43020 5 43353047 to 43355259 2212 - lincRNA gene predicted gene 43020
Gm43699 5 43376447 to 43379637 3190 + lincRNA gene predicted gene 43699
Gm43021 5 43470692 to 43474853 4161 + lincRNA gene predicted gene 43021
Tssr46087 5 43515476 to 43515485 9 + TSS region transcription start site region 46087
Tssr46088 5 43515513 to 43515534 21 + TSS region transcription start site region 46088
C1qtnf7 5 43515538 to 43618803 103265 + protein coding gene C1q and tumor necrosis factor related protein 7
Tssr46089 5 43515751 to 43515794 43 + TSS region transcription start site region 46089
Tssr46090 5 43515806 to 43515818 12 + TSS region transcription start site region 46090
Tssr46091 5 43515921 to 43515930 9 + TSS region transcription start site region 46091
Gm43022 5 43528626 to 43532893 4267 + unclassified gene predicted gene 43022
Gm15866 5 43555746 to 43575836 20090 - antisense lncRNA gene predicted gene 15866
Gm43023 5 43575821 to 43577926 2105 + unclassified gene predicted gene 43023
Cc2d2a 5 43662373 to 43740975 78602 + protein coding gene coiled-coil and C2 domain containing 2A
Tssr46092 5 43662373 to 43662384 11 + TSS region transcription start site region 46092
Tssr46093 5 43662386 to 43662406 20 + TSS region transcription start site region 46093
Tssr46094 5 43665449 to 43665463 14 + TSS region transcription start site region 46094
Gm35762 5 43670560 to 43671943 1383 - lncRNA gene predicted gene, 35762
Tssr1472 5 43672289 to 43672300 11 + TSS region transcription start site region 1472
Tssr46095 5 43672304 to 43672326 22 + TSS region transcription start site region 46095
Tssr46096 5 43672329 to 43672355 26 + TSS region transcription start site region 46096
Tssr46097 5 43711568 to 43711574 6 + TSS region transcription start site region 46097
Fbxl5 5 43744618 to 43782149 37531 - protein coding gene F-box and leucine-rich repeat protein 5
Tssr50859 5 43749494 to 43749502 8 - TSS region transcription start site region 50859
Gm42462 5 43752909 to 43754271 1362 - unclassified gene predicted gene 42462
Cpgi15831 5 43781413 to 43782861 1448 CpG island CpG island 15831
Tssr50860 5 43782049 to 43782060 11 - TSS region transcription start site region 50860
Tssr50861 5 43782063 to 43782085 22 - TSS region transcription start site region 50861
Tssr50862 5 43782086 to 43782143 57 - TSS region transcription start site region 50862
Gm43182 5 43782243 to 43784770 2527 + unclassified gene predicted gene 43182
Gm43181 5 43784046 to 43786117 2071 - unclassified gene predicted gene 43181
Tssr50863 5 43784768 to 43784770 2 - TSS region transcription start site region 50863
Tssr50864 5 43786107 to 43786123 16 - TSS region transcription start site region 50864
Tssr46098 5 43803629 to 43803632 3 + TSS region transcription start site region 46098
Gm42555 5 43807705 to 43808743 1038 - lincRNA gene predicted gene 42555
Cpgi15832 5 43807875 to 43808328 453 CpG island CpG island 15832
Tssr46099 5 43808005 to 43808010 5 + TSS region transcription start site region 46099
D5Dmo8 5 43818633 to 43818764 131 DNA segment DNA segment, Chr 5, David Ornitz 8
Tssr46100 5 43818876 to 43818892 16 + TSS region transcription start site region 46100
Bst1 5 43818879 to 43843468 24589 + protein coding gene bone marrow stromal cell antigen 1
Tssr46101 5 43818899 to 43818928 29 + TSS region transcription start site region 46101
Tssr46102 5 43818939 to 43818954 15 + TSS region transcription start site region 46102
D5Jcs608 5 43820092 to 43820253 161 DNA segment DNA segment, Chr 5, John C. Schimenti 608
Tssr50865 5 43821778 to 43821799 21 - TSS region transcription start site region 50865
Tssr46103 5 43842117 to 43842138 21 + TSS region transcription start site region 46103
Tssr46104 5 43842965 to 43842980 15 + TSS region transcription start site region 46104
Tssr46105 5 43854368 to 43854398 30 + TSS region transcription start site region 46105
Tssr46106 5 43856117 to 43856154 37 + TSS region transcription start site region 46106
Tssr50866 5 43867814 to 43867826 12 - TSS region transcription start site region 50866
Tssr46107 5 43868532 to 43868546 14 + TSS region transcription start site region 46107
Tssr46108 5 43868653 to 43868666 13 + TSS region transcription start site region 46108
Tssr50867 5 43868687 to 43868699 12 - TSS region transcription start site region 50867
Tssr50868 5 43868748 to 43868762 14 - TSS region transcription start site region 50868
Tssr46109 5 43868802 to 43868866 64 + TSS region transcription start site region 46109
Cd38 5 43868809 to 43912374 43565 + protein coding gene CD38 antigen
Cpgi15833 5 43868959 to 43869293 334 CpG island CpG island 15833
Tssr50869 5 43869128 to 43869139 11 - TSS region transcription start site region 50869
Tssr50870 5 43869460 to 43869492 32 - TSS region transcription start site region 50870
Tssr46110 5 43869791 to 43869796 5 + TSS region transcription start site region 46110
Tssr46111 5 43875079 to 43875085 6 + TSS region transcription start site region 46111
Tssr46112 5 43875337 to 43875347 10 + TSS region transcription start site region 46112
Gm16014 5 43876030 to 43877304 1274 + sense intronic lncRNA gene predicted gene 16014
Tssr46113 5 43879925 to 43879932 7 + TSS region transcription start site region 46113
Tssr50871 5 43881922 to 43881928 6 - TSS region transcription start site region 50871
Tssr46114 5 43882544 to 43882553 9 + TSS region transcription start site region 46114
Tssr46115 5 43900373 to 43900421 48 + TSS region transcription start site region 46115
Tssr46116 5 43901470 to 43901519 49 + TSS region transcription start site region 46116
Tssr46117 5 43901917 to 43901957 40 + TSS region transcription start site region 46117
Tssr46118 5 43908583 to 43908632 49 + TSS region transcription start site region 46118
Gm16015 5 43909215 to 43909885 670 - antisense lncRNA gene predicted gene 16015
Tssr50872 5 43909862 to 43909881 19 - TSS region transcription start site region 50872
Tssr1473 5 43910386 to 43910393 7 + TSS region transcription start site region 1473
Tssr46119 5 43910428 to 43910432 4 + TSS region transcription start site region 46119
Tssr46120 5 43910458 to 43910472 14 + TSS region transcription start site region 46120
Tssr46121 5 43910525 to 43910531 6 + TSS region transcription start site region 46121
Tssr46122 5 43910568 to 43910575 7 + TSS region transcription start site region 46122
Tssr46123 5 43910697 to 43910711 14 + TSS region transcription start site region 46123
Tssr46124 5 43910720 to 43910733 13 + TSS region transcription start site region 46124
Tssr46125 5 43910844 to 43910862 18 + TSS region transcription start site region 46125
Tssr46126 5 43910888 to 43910907 19 + TSS region transcription start site region 46126
Tssr46127 5 43910910 to 43910976 66 + TSS region transcription start site region 46127
Tssr46128 5 43911037 to 43911051 14 + TSS region transcription start site region 46128
Tssr46129 5 43911166 to 43911177 11 + TSS region transcription start site region 46129
Gm7879 5 43913144 to 43913904 760 + protein coding gene predicted pseudogene 7879
Tssr46130 5 43913146 to 43913151 5 + TSS region transcription start site region 46130
Gm7882 5 43916692 to 43918223 1531 + pseudogene predicted gene 7882
D5Dmo7 5 43943064 to 43943223 159 DNA segment DNA segment, Chr 5, David Ornitz 7
Gm5292 5 43943903 to 43944482 579 - pseudogene predicted gene 5292
Cpgi15834 5 43948064 to 43948391 327 CpG island CpG island 15834
Gm43183 5 43948116 to 43948662 546 + unclassified gene predicted gene 43183
Gm43184 5 43948120 to 43948661 541 - unclassified gene predicted gene 43184
Tssr50873 5 43948313 to 43948327 14 - TSS region transcription start site region 50873
Tssr46131 5 43948707 to 43948712 5 + TSS region transcription start site region 46131
D5Mit108 5 43953653 to 43953803 150 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 108
Fgfbp1 5 43978858 to 43981779 2921 - protein coding gene fibroblast growth factor binding protein 1
Tssr50874 5 43981757 to 43981773 16 - TSS region transcription start site region 50874
Tssr50875 5 43981782 to 43981794 12 - TSS region transcription start site region 50875
Tssr50876 5 43981800 to 43981809 9 - TSS region transcription start site region 50876
Prom1 5 43993620 to 44102032 108412 - protein coding gene prominin 1
Tssr50877 5 44038829 to 44038839 10 - TSS region transcription start site region 50877
Cd8ts1 5 44058006 to 44058109 103 QTL CD8 T cell subset 1
D5Mit79 5 44058006 to 44058109 103 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 79
Gm42716 5 44068198 to 44090854 22656 - unclassified non-coding RNA gene predicted gene 42716
Tssr50878 5 44073761 to 44073784 23 - TSS region transcription start site region 50878
Tssr1474 5 44073787 to 44073798 11 - TSS region transcription start site region 1474
Tssr50879 5 44089541 to 44089556 15 - TSS region transcription start site region 50879
Tssr50880 5 44099188 to 44099194 6 - TSS region transcription start site region 50880
Tssr50881 5 44099195 to 44099217 22 - TSS region transcription start site region 50881
Tssr50882 5 44099220 to 44099237 17 - TSS region transcription start site region 50882
2010320H13Rik 5 44099654 to 44100479 825 unclassified non-coding RNA gene RIKEN cDNA 2010320H13 gene
Gm16401 5 44100442 to 44102515 2073 + antisense lncRNA gene predicted gene 16401
Cpgi15835 5 44100451 to 44101704 1253 CpG island CpG island 15835
Tssr50883 5 44101542 to 44101560 18 - TSS region transcription start site region 50883
Tssr50884 5 44101668 to 44101745 77 - TSS region transcription start site region 50884
Tssr50885 5 44101951 to 44101965 14 - TSS region transcription start site region 50885