Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:40133082-43394711

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D5Mit266 5 40145698 to 40145813 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 266
Gm2810 5 40328438 to 40329424 986 + pseudogene predicted pseudogene 2810
Tssr46066 5 40328648 to 40328682 34 + TSS region transcription start site region 46066
D5Mit353 5 40372406 to 40372526 120 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 353
Kdnw1 5 40372526 to 8865949 -31506577 QTL kidney weight 1
Gm23022 5 40405750 to 40405929 179 - snRNA gene predicted gene, 23022
Tssr50834 5 40439956 to 40439959 3 - TSS region transcription start site region 50834
D5Mit128 5 40486221 to 40486319 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 128
D5Mit130 5 40832360 to 40832507 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 130
Tssr1471 5 41035651 to 41035662 11 + TSS region transcription start site region 1471
D5Mit150 5 41088662 to 41088795 133 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 150
Tssr46067 5 41187716 to 41187717 1 + TSS region transcription start site region 46067
Tssr46068 5 41250606 to 41250607 1 + TSS region transcription start site region 46068
4930519E07Rik 5 41281236 to 41282900 1664 + unclassified gene RIKEN cDNA 4930519E07 gene
Tssr46069 5 41342096 to 41342098 2 + TSS region transcription start site region 46069
Gm4754 5 41342123 to 41342931 808 + pseudogene predicted gene 4754
Gm43806 5 41421576 to 41422044 468 - pseudogene predicted gene 43806
Cpgi15821 5 41556754 to 41557113 359 CpG island CpG island 15821
Gm35380 5 41605819 to 41616325 10506 - lncRNA gene predicted gene, 35380
Rab28 5 41624976 to 41708157 83181 - protein coding gene RAB28, member RAS oncogene family
Tssr50835 5 41636981 to 41636985 4 - TSS region transcription start site region 50835
Tssr50836 5 41684156 to 41684161 5 - TSS region transcription start site region 50836
Tssr50837 5 41701287 to 41701329 42 - TSS region transcription start site region 50837
Tssr50838 5 41706912 to 41706916 4 - TSS region transcription start site region 50838
Cpgi15822 5 41707039 to 41708563 1524 CpG island CpG island 15822
Tssr46070 5 41707170 to 41707178 8 + TSS region transcription start site region 46070
Tssr50839 5 41707417 to 41707429 12 - TSS region transcription start site region 50839
Tssr50840 5 41707670 to 41707681 11 - TSS region transcription start site region 50840
Tssr50841 5 41707969 to 41708014 45 - TSS region transcription start site region 50841
Tssr50842 5 41708118 to 41708129 11 - TSS region transcription start site region 50842
Tssr50843 5 41708135 to 41708170 35 - TSS region transcription start site region 50843
Gm19004 5 41717092 to 41717625 533 + pseudogene predicted gene, 19004
Cpgi15823 5 41754831 to 41754992 161 CpG island CpG island 15823
Cpgi15824 5 41755486 to 41755878 392 CpG island CpG island 15824
Cpgi15825 5 41761214 to 41762414 1200 CpG island CpG island 15825
Nkx3-2 5 41761483 to 41764220 2737 - protein coding gene NK3 homeobox 2
Gm46910 5 41762187 to 41765085 2898 + lncRNA gene predicted gene, 46910
Tssr46071 5 41762653 to 41762664 11 + TSS region transcription start site region 46071
Cpgi15826 5 41763082 to 41764711 1629 CpG island CpG island 15826
Tssr50844 5 41764038 to 41764042 4 - TSS region transcription start site region 50844
Tssr50845 5 41764493 to 41764494 1 - TSS region transcription start site region 50845
Tssr50846 5 41764549 to 41764561 12 - TSS region transcription start site region 50846
Cpgi15827 5 41766706 to 41767833 1127 CpG island CpG island 15827
Tssr46072 5 41767659 to 41767663 4 + TSS region transcription start site region 46072
Cpgi15828 5 41768427 to 41768623 196 CpG island CpG island 15828
D5Mit104 5 41774200 to 41774344 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 104
Bod1l 5 41787538 to 41844315 56777 - protein coding gene biorientation of chromosomes in cell division 1-like
Tssr50847 5 41799918 to 41799938 20 - TSS region transcription start site region 50847
Tssr50848 5 41807195 to 41807227 32 - TSS region transcription start site region 50848
Tssr50849 5 41810079 to 41810105 26 - TSS region transcription start site region 50849
Tssr50850 5 41819007 to 41819024 17 - TSS region transcription start site region 50850
Tssr50851 5 41819383 to 41819391 8 - TSS region transcription start site region 50851
Tssr50852 5 41821438 to 41821461 23 - TSS region transcription start site region 50852
Tssr50853 5 41828837 to 41828850 13 - TSS region transcription start site region 50853
Tssr50854 5 41832565 to 41832587 22 - TSS region transcription start site region 50854
Cpgi15829 5 41843670 to 41844607 937 CpG island CpG island 15829
Tssr50855 5 41844232 to 41844329 97 - TSS region transcription start site region 50855
Gm5298 5 41853310 to 41854201 891 - pseudogene predicted gene 5298
D5Dcr56 5 41878493 to 41878601 108 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 56
Mir6414 5 41891342 to 41891423 81 + miRNA gene microRNA 6414
Gm20156 5 41934397 to 41935672 1275 - pseudogene predicted gene, 20156
Gm40294 5 42052935 to 42057050 4115 + lncRNA gene predicted gene, 40294
Gm16223 5 42067960 to 42216784 148824 + protein coding gene predicted gene 16223
D5Mit196 5 42102112 to 42102217 105 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 196
D5Mit129 5 42131193 to 42131340 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 129
Gm7181 5 42499981 to 42500414 433 - pseudogene predicted gene 7181
Gm40295 5 42513968 to 42525800 11832 - lncRNA gene predicted gene, 40295
Tssr46073 5 42615195 to 42615198 3 + TSS region transcription start site region 46073
Gm5554 5 42963404 to 42964609 1205 - pseudogene predicted gene 5554
D5Mit78b 5 43025477 to 43025599 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 78b
D5Mit78a 5 43025477 to 43025719 242 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 78a
Gm43700 5 43026548 to 43038236 11688 - lincRNA gene predicted gene 43700
Gm42711 5 43039737 to 43044061 4324 - lincRNA gene predicted gene 42711
Tssr50856 5 43044044 to 43044070 26 - TSS region transcription start site region 50856
Gm42553 5 43059255 to 43060883 1628 + unclassified gene predicted gene 42553
Tssr46074 5 43062780 to 43062802 22 + TSS region transcription start site region 46074
Tssr46075 5 43103975 to 43103987 12 + TSS region transcription start site region 46075
Gm42552 5 43143831 to 43148327 4496 - unclassified gene predicted gene 42552
Gm7854 5 43151686 to 43235354 83668 - antisense lncRNA gene predicted gene 7854
Gm46911 5 43208701 to 43216243 7542 + protein coding gene predicted gene, 46911
Cpgi15830 5 43232441 to 43235578 3137 CpG island CpG island 15830
Tssr50857 5 43232777 to 43232846 69 - TSS region transcription start site region 50857
Cpeb2 5 43233170 to 43289724 56554 + protein coding gene cytoplasmic polyadenylation element binding protein 2
Tssr46076 5 43233217 to 43233237 20 + TSS region transcription start site region 46076
Tssr46077 5 43233243 to 43233259 16 + TSS region transcription start site region 46077
Tssr46078 5 43233485 to 43233491 6 + TSS region transcription start site region 46078
Tssr46079 5 43233677 to 43233685 8 + TSS region transcription start site region 46079
Tssr46080 5 43233694 to 43233703 9 + TSS region transcription start site region 46080
Tssr46081 5 43233714 to 43233717 3 + TSS region transcription start site region 46081
Tssr46082 5 43233732 to 43233741 9 + TSS region transcription start site region 46082
Tssr50858 5 43233833 to 43233839 6 - TSS region transcription start site region 50858
Tssr46083 5 43233886 to 43233895 9 + TSS region transcription start site region 46083
Tssr46084 5 43233928 to 43233951 23 + TSS region transcription start site region 46084
Tssr46085 5 43233962 to 43233979 17 + TSS region transcription start site region 46085
Gm42551 5 43248185 to 43249757 1572 + unclassified gene predicted gene 42551
Tssr46086 5 43251698 to 43251713 15 + TSS region transcription start site region 46086
6030400A10Rik 5 43265157 to 43266368 1211 + unclassified gene RIKEN cDNA 6030400A10 gene
Gm43020 5 43353047 to 43355259 2212 - lincRNA gene predicted gene 43020
Gm43699 5 43376447 to 43379637 3190 + lincRNA gene predicted gene 43699