Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:3956340-5698093

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Akap9 5 3927827 to 4080204 152377 + protein coding gene A kinase (PRKA) anchor protein (yotiao) 9
Tssr45078 5 3957736 to 3957754 18 + TSS region transcription start site region 45078
Tssr45079 5 3981382 to 3981386 4 + TSS region transcription start site region 45079
Wdr46-ps 5 3989005 to 3990705 1700 + pseudogene Wdr46 retrotransposed pseudogene
Tssr45080 5 3995033 to 3995035 2 + TSS region transcription start site region 45080
Tssr45081 5 4005314 to 4005336 22 + TSS region transcription start site region 45081
Tssr45082 5 4023304 to 4023318 14 + TSS region transcription start site region 45082
Tssr45083 5 4023343 to 4023357 14 + TSS region transcription start site region 45083
Tssr45084 5 4038983 to 4039001 18 + TSS region transcription start site region 45084
Gm40260 5 4073414 to 4077829 4415 - lncRNA gene predicted gene, 40260
Gm43031 5 4073571 to 4075457 1886 + sense intronic lncRNA gene predicted gene 43031
Cyp51 5 4081145 to 4104746 23601 - protein coding gene cytochrome P450, family 51
Cpgi15516 5 4103576 to 4105010 1434 CpG island CpG island 15516
Tssr50001 5 4104391 to 4104443 52 - TSS region transcription start site region 50001
Tssr50002 5 4104447 to 4104462 15 - TSS region transcription start site region 50002
Tssr50003 5 4104483 to 4104492 9 - TSS region transcription start site region 50003
Tssr50004 5 4104598 to 4104624 26 - TSS region transcription start site region 50004
Tssr50005 5 4104631 to 4104642 11 - TSS region transcription start site region 50005
Tssr50006 5 4104654 to 4104792 138 - TSS region transcription start site region 50006
Tssr50007 5 4115094 to 4115113 19 - TSS region transcription start site region 50007
Mterf1b 5 4192367 to 4197651 5284 + protein coding gene mitochondrial transcription termination factor 1b
D5Mit345 5 4223455 to 4223552 97 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 345
Pbwg14 5 4223455 to 4223552 97 QTL postnatal body weight growth 14
D5Mit193 5 4232826 to 4232961 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 193
D5Mit331 5 4246959 to 4247065 106 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 331
Gm40261 5 4273277 to 4317978 44701 + lncRNA gene predicted gene, 40261
Tssr45085 5 4333448 to 4333452 4 + TSS region transcription start site region 45085
Tssr45086 5 4344708 to 4344713 5 + TSS region transcription start site region 45086
D5Mit249 5 4586369 to 4586511 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 249
Fzd1 5 4753839 to 4758035 4196 - protein coding gene frizzled class receptor 1
Cpgi15517 5 4755765 to 4758387 2622 CpG island CpG island 15517
Tssr50008 5 4757797 to 4757806 9 - TSS region transcription start site region 50008
Tssr50009 5 4757875 to 4757887 12 - TSS region transcription start site region 50009
Tssr50010 5 4757908 to 4757920 12 - TSS region transcription start site region 50010
Tssr50011 5 4757926 to 4757936 10 - TSS region transcription start site region 50011
Tssr50012 5 4757977 to 4757995 18 - TSS region transcription start site region 50012
Tssr50013 5 4757999 to 4758022 23 - TSS region transcription start site region 50013
Tssr50014 5 4758026 to 4758045 19 - TSS region transcription start site region 50014
Gm15750 5 4764834 to 4765665 831 + pseudogene predicted gene 15750
Tssr50015 5 4779936 to 4779937 1 - TSS region transcription start site region 50015
Gm42744 5 4784753 to 4799094 14341 - lincRNA gene predicted gene 42744
Tssr50016 5 4799092 to 4799097 5 - TSS region transcription start site region 50016
Gm44483 5 4802457 to 4802553 96 + miRNA gene predicted gene, 44483
Cdk14 5 4803384 to 5380251 576867 - protein coding gene cyclin-dependent kinase 14
Tssr50017 5 4803633 to 4803638 5 - TSS region transcription start site region 50017
Tssr50018 5 4804528 to 4804545 17 - TSS region transcription start site region 50018
Gm43112 5 4819506 to 4822627 3121 - sense intronic lncRNA gene predicted gene 43112
Gm43113 5 4826340 to 4828093 1753 - sense intronic lncRNA gene predicted gene 43113
Tssr50019 5 4832692 to 4832728 36 - TSS region transcription start site region 50019
Gm25037 5 4854314 to 4854423 109 - miRNA gene predicted gene, 25037
Gm43111 5 4868348 to 4870266 1918 - sense intronic lncRNA gene predicted gene 43111
Tssr50020 5 4875680 to 4875691 11 - TSS region transcription start site region 50020
D5Mit346.1 5 4879428 to 4879555 127 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 346.1
D5Mit346 5 4879531 to 4879650 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 346
Eye1 5 4879531 to 4879650 119 QTL eye weight 1
Gm22897 5 4985111 to 4985237 126 - snoRNA gene predicted gene, 22897
D5Mit343.2 5 5005213 to 5005364 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 343.2
Tssr50021 5 5076242 to 5076276 34 - TSS region transcription start site region 50021
Tssr50022 5 5108443 to 5108447 4 - TSS region transcription start site region 50022
Tssr50023 5 5120018 to 5120022 4 - TSS region transcription start site region 50023
Gm43623 5 5137445 to 5140107 2662 - unclassified non-coding RNA gene predicted gene 43623
Gm43577 5 5154571 to 5157914 3343 - sense intronic lncRNA gene predicted gene 43577
Gm10484 5 5170394 to 5175152 4758 - sense intronic lncRNA gene predicted gene 10484
D5Mit49 5 5172736 to 5172867 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 49
Tssr50024 5 5215864 to 5215868 4 - TSS region transcription start site region 50024
Tssr50025 5 5262109 to 5262132 23 - TSS region transcription start site region 50025
Tssr50026 5 5265224 to 5265234 10 - TSS region transcription start site region 50026
Tssr50027 5 5265669 to 5265683 14 - TSS region transcription start site region 50027
Tssr50028 5 5265696 to 5265697 1 - TSS region transcription start site region 50028
Tssr50029 5 5265699 to 5265720 21 - TSS region transcription start site region 50029
Tssr50030 5 5265723 to 5265728 5 - TSS region transcription start site region 50030
Tssr50031 5 5265790 to 5265806 16 - TSS region transcription start site region 50031
Tssr50032 5 5265967 to 5266031 64 - TSS region transcription start site region 50032
Tssr50033 5 5266038 to 5266083 45 - TSS region transcription start site region 50033
Gm43727 5 5304356 to 5307002 2646 - sense intronic lncRNA gene predicted gene 43727
Gm43728 5 5309002 to 5311623 2621 - sense intronic lncRNA gene predicted gene 43728
Tssr50034 5 5314581 to 5314592 11 - TSS region transcription start site region 50034
Tssr50035 5 5314593 to 5314603 10 - TSS region transcription start site region 50035
Tssr50036 5 5314611 to 5314624 13 - TSS region transcription start site region 50036
D5Mit344 5 5319806 to 5319918 112 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 344
Tssr50037 5 5328144 to 5328181 37 - TSS region transcription start site region 50037
Tssr50038 5 5346610 to 5346628 18 - TSS region transcription start site region 50038
Tssr50039 5 5353794 to 5353797 3 - TSS region transcription start site region 50039
Tssr50040 5 5365826 to 5365827 1 - TSS region transcription start site region 50040
Tssr50041 5 5367130 to 5367154 24 - TSS region transcription start site region 50041
Gm30151 5 5368774 to 5373325 4551 + lncRNA gene predicted gene, 30151
Tssr50042 5 5374766 to 5374780 14 - TSS region transcription start site region 50042
Cpgi15518 5 5379694 to 5381089 1395 CpG island CpG island 15518
Tssr50043 5 5380136 to 5380141 5 - TSS region transcription start site region 50043
Tssr50044 5 5380154 to 5380169 15 - TSS region transcription start site region 50044
Tssr50045 5 5380185 to 5380229 44 - TSS region transcription start site region 50045
Tssr50046 5 5380545 to 5380556 11 - TSS region transcription start site region 50046
Tssr50047 5 5380607 to 5380682 75 - TSS region transcription start site region 50047
Gm30267 5 5380777 to 5383141 2364 + lncRNA gene predicted gene, 30267
Tssr45087 5 5420057 to 5420069 12 + TSS region transcription start site region 45087
Tssr50048 5 5420244 to 5420262 18 - TSS region transcription start site region 50048
Tssr1416 5 5420267 to 5420320 53 - TSS region transcription start site region 1416
Tssr45088 5 5421719 to 5421722 3 + TSS region transcription start site region 45088
1700015F17Rik 5 5437827 to 5479143 41316 - protein coding gene RIKEN cDNA 1700015F17 gene
Tssr50049 5 5479040 to 5479060 20 - TSS region transcription start site region 50049
Tssr50050 5 5479063 to 5479075 12 - TSS region transcription start site region 50050
Tssr50051 5 5479077 to 5479107 30 - TSS region transcription start site region 50051
Tssr50052 5 5479120 to 5479136 16 - TSS region transcription start site region 50052
Gm30325 5 5479160 to 5494070 14910 + lncRNA gene predicted gene, 30325
Tssr45089 5 5479177 to 5479189 12 + TSS region transcription start site region 45089
Tssr45090 5 5481551 to 5481554 3 + TSS region transcription start site region 45090
Tssr45091 5 5504816 to 5504824 8 + TSS region transcription start site region 45091
Cldn12 5 5505015 to 5514976 9961 - protein coding gene claudin 12
Cpgi15519 5 5508138 to 5508377 239 CpG island CpG island 15519
Cpgi15520 5 5514093 to 5515030 937 CpG island CpG island 15520
Tssr50053 5 5514808 to 5514830 22 - TSS region transcription start site region 50053
Tssr50054 5 5514836 to 5514858 22 - TSS region transcription start site region 50054
Tssr50055 5 5514877 to 5514891 14 - TSS region transcription start site region 50055
Tssr50056 5 5514906 to 5514918 12 - TSS region transcription start site region 50056
Gtpbp10 5 5537454 to 5559538 22084 - protein coding gene GTP-binding protein 10 (putative)
Cpgi15521 5 5559176 to 5559804 628 CpG island CpG island 15521
Tssr50057 5 5559501 to 5559517 16 - TSS region transcription start site region 50057
Tssr50058 5 5559521 to 5559545 24 - TSS region transcription start site region 50058
Gm30652 5 5567328 to 5567757 429 + pseudogene predicted gene, 30652
Gm8773 5 5573799 to 5576203 2404 + lincRNA gene predicted gene 8773
Cpgi15522 5 5573814 to 5574328 514 CpG island CpG island 15522
Tssr45092 5 5573994 to 5574013 19 + TSS region transcription start site region 45092
Cfap69 5 5579278 to 5664239 84961 - protein coding gene cilia and flagella associated protein 69
n-TUtca1 5 5627681 to 5627751 70 + tRNA gene nuclear encoded tRNA selenocysteine 1 (anticodon TCA)
Tssr1417 5 5644794 to 5644795 1 + TSS region transcription start site region 1417
Tssr50059 5 5663207 to 5663221 14 - TSS region transcription start site region 50059
Tssr50060 5 5663263 to 5663294 31 - TSS region transcription start site region 50060
Cpgi15523 5 5663755 to 5664386 631 CpG island CpG island 15523
Tssr50061 5 5664176 to 5664181 5 - TSS region transcription start site region 50061
Tssr50062 5 5664183 to 5664192 9 - TSS region transcription start site region 50062
Tssr50063 5 5664196 to 5664253 57 - TSS region transcription start site region 50063
Gm40262 5 5664289 to 5716533 52244 + lncRNA gene predicted gene, 40262
Steap2 5 5664829 to 5694568 29739 - protein coding gene six transmembrane epithelial antigen of prostate 2
D5Mit417 5 5692220 to 5692365 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 417
Cpgi15524 5 5693614 to 5694706 1092 CpG island CpG island 15524
Tssr50064 5 5694024 to 5694109 85 - TSS region transcription start site region 50064
Tssr50065 5 5694269 to 5694312 43 - TSS region transcription start site region 50065
Tssr50066 5 5694436 to 5694447 11 - TSS region transcription start site region 50066
Tssr50067 5 5694480 to 5694491 11 - TSS region transcription start site region 50067
Tssr50068 5 5694499 to 5694539 40 - TSS region transcription start site region 50068
Tssr50069 5 5694559 to 5694581 22 - TSS region transcription start site region 50069
Gm43219 5 5696858 to 5698794 1936 + unclassified gene predicted gene 43219