Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:38996749-40068574

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42857 5 39002693 to 39003031 338 - pseudogene predicted gene 42857
Gm46937 5 39082016 to 39099460 17444 + lncRNA gene predicted gene, 46937
Gm40293 5 39253950 to 39307084 53134 - lincRNA gene predicted gene, 40293
Gm40292 5 39307120 to 39313295 6175 + lincRNA gene predicted gene, 40292
Tssr46064 5 39307123 to 39307133 10 + TSS region transcription start site region 46064
Gm43456 5 39337360 to 39337816 456 - pseudogene predicted gene 43456
Tssr50825 5 39338859 to 39338880 21 - TSS region transcription start site region 50825
Tssr50826 5 39338896 to 39338910 14 - TSS region transcription start site region 50826
Gm25505 5 39346691 to 39346936 245 + unclassified non-coding RNA gene predicted gene, 25505
Gm5291 5 39401347 to 39402245 898 - pseudogene predicted gene 5291
4930421C12Rik 5 39442001 to 39443574 1573 - unclassified gene RIKEN cDNA 4930421C12 gene
Gm42524 5 39458097 to 39477679 19582 + lincRNA gene predicted gene 42524
4930513D17Rik 5 39461749 to 39603574 141825 - lincRNA gene RIKEN cDNA 4930513D17 gene
Gm25377 5 39520976 to 39521104 128 - snoRNA gene predicted gene, 25377
Tssr50827 5 39603521 to 39603536 15 - TSS region transcription start site region 50827
Gm42528 5 39606927 to 39610344 3417 - unclassified gene predicted gene 42528
Hs3st1 5 39613935 to 39645143 31208 - protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 1
Tssr50828 5 39614975 to 39614993 18 - TSS region transcription start site region 50828
Tssr50829 5 39615066 to 39615100 34 - TSS region transcription start site region 50829
Cpgi15819 5 39620755 to 39621220 465 CpG island CpG island 15819
Tssr50830 5 39641867 to 39641894 27 - TSS region transcription start site region 50830
Tssr50831 5 39643825 to 39643865 40 - TSS region transcription start site region 50831
Cpgi15820 5 39644067 to 39645331 1264 CpG island CpG island 15820
Tssr50832 5 39644601 to 39644619 18 - TSS region transcription start site region 50832
Tssr50833 5 39644644 to 39644649 5 - TSS region transcription start site region 50833
D5Dmo6 5 39645528 to 39645697 169 DNA segment DNA segment, Chr 5, David Ornitz 6
Tssr46065 5 39798102 to 39798103 1 + TSS region transcription start site region 46065
Gm7816 5 39798214 to 39799407 1193 + pseudogene predicted pseudogene 7816
Gm35191 5 39975676 to 39985628 9952 - lincRNA gene predicted gene, 35191