Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:38863438-41794424

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clnk 5 38706462 to 38876812 170350 - protein coding gene cytokine-dependent hematopoietic cell linker
Tssr50823 5 38876708 to 38876757 49 - TSS region transcription start site region 50823
Tssr50824 5 38936872 to 38936879 7 - TSS region transcription start site region 50824
Gm42857 5 39002693 to 39003031 338 - pseudogene predicted gene 42857
Gm46937 5 39082016 to 39099460 17444 + lncRNA gene predicted gene, 46937
Gm40293 5 39253950 to 39307084 53134 - lincRNA gene predicted gene, 40293
Gm40292 5 39307120 to 39313295 6175 + lincRNA gene predicted gene, 40292
Tssr46064 5 39307123 to 39307133 10 + TSS region transcription start site region 46064
Gm43456 5 39337360 to 39337816 456 - pseudogene predicted gene 43456
Tssr50825 5 39338859 to 39338880 21 - TSS region transcription start site region 50825
Tssr50826 5 39338896 to 39338910 14 - TSS region transcription start site region 50826
Gm25505 5 39346691 to 39346936 245 + unclassified non-coding RNA gene predicted gene, 25505
Gm5291 5 39401347 to 39402245 898 - pseudogene predicted gene 5291
4930421C12Rik 5 39442001 to 39443574 1573 - unclassified gene RIKEN cDNA 4930421C12 gene
Gm42524 5 39458097 to 39477679 19582 + lincRNA gene predicted gene 42524
4930513D17Rik 5 39461749 to 39603574 141825 - lincRNA gene RIKEN cDNA 4930513D17 gene
Gm25377 5 39520976 to 39521104 128 - snoRNA gene predicted gene, 25377
Tssr50827 5 39603521 to 39603536 15 - TSS region transcription start site region 50827
Gm42528 5 39606927 to 39610344 3417 - unclassified gene predicted gene 42528
Hs3st1 5 39613935 to 39645143 31208 - protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 1
Tssr50828 5 39614975 to 39614993 18 - TSS region transcription start site region 50828
Tssr50829 5 39615066 to 39615100 34 - TSS region transcription start site region 50829
Cpgi15819 5 39620755 to 39621220 465 CpG island CpG island 15819
Tssr50830 5 39641867 to 39641894 27 - TSS region transcription start site region 50830
Tssr50831 5 39643825 to 39643865 40 - TSS region transcription start site region 50831
Cpgi15820 5 39644067 to 39645331 1264 CpG island CpG island 15820
Tssr50832 5 39644601 to 39644619 18 - TSS region transcription start site region 50832
Tssr50833 5 39644644 to 39644649 5 - TSS region transcription start site region 50833
D5Dmo6 5 39645528 to 39645697 169 DNA segment DNA segment, Chr 5, David Ornitz 6
Tssr46065 5 39798102 to 39798103 1 + TSS region transcription start site region 46065
Gm7816 5 39798214 to 39799407 1193 + pseudogene predicted pseudogene 7816
Gm35191 5 39975676 to 39985628 9952 - lincRNA gene predicted gene, 35191
D5Dcr42 5 40101001 to 40101097 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 42
D5Mit266 5 40145698 to 40145813 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 266
Gm2810 5 40328438 to 40329424 986 + pseudogene predicted pseudogene 2810
Tssr46066 5 40328648 to 40328682 34 + TSS region transcription start site region 46066
D5Mit353 5 40372406 to 40372526 120 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 353
Kdnw1 5 40372526 to 8865949 -31506577 QTL kidney weight 1
Gm23022 5 40405750 to 40405929 179 - snRNA gene predicted gene, 23022
Tssr50834 5 40439956 to 40439959 3 - TSS region transcription start site region 50834
D5Mit128 5 40486221 to 40486319 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 128
D5Mit130 5 40832360 to 40832507 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 130
Tssr1471 5 41035651 to 41035662 11 + TSS region transcription start site region 1471
D5Mit150 5 41088662 to 41088795 133 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 150
Tssr46067 5 41187716 to 41187717 1 + TSS region transcription start site region 46067
Tssr46068 5 41250606 to 41250607 1 + TSS region transcription start site region 46068
4930519E07Rik 5 41281236 to 41282900 1664 + unclassified gene RIKEN cDNA 4930519E07 gene
Tssr46069 5 41342096 to 41342098 2 + TSS region transcription start site region 46069
Gm4754 5 41342123 to 41342931 808 + pseudogene predicted gene 4754
Gm43806 5 41421576 to 41422044 468 - pseudogene predicted gene 43806
Cpgi15821 5 41556754 to 41557113 359 CpG island CpG island 15821
Gm35380 5 41605819 to 41616325 10506 - lncRNA gene predicted gene, 35380
Rab28 5 41624976 to 41708157 83181 - protein coding gene RAB28, member RAS oncogene family
Tssr50835 5 41636981 to 41636985 4 - TSS region transcription start site region 50835
Tssr50836 5 41684156 to 41684161 5 - TSS region transcription start site region 50836
Tssr50837 5 41701287 to 41701329 42 - TSS region transcription start site region 50837
Tssr50838 5 41706912 to 41706916 4 - TSS region transcription start site region 50838
Cpgi15822 5 41707039 to 41708563 1524 CpG island CpG island 15822
Tssr46070 5 41707170 to 41707178 8 + TSS region transcription start site region 46070
Tssr50839 5 41707417 to 41707429 12 - TSS region transcription start site region 50839
Tssr50840 5 41707670 to 41707681 11 - TSS region transcription start site region 50840
Tssr50841 5 41707969 to 41708014 45 - TSS region transcription start site region 50841
Tssr50842 5 41708118 to 41708129 11 - TSS region transcription start site region 50842
Tssr50843 5 41708135 to 41708170 35 - TSS region transcription start site region 50843
Gm19004 5 41717092 to 41717625 533 + pseudogene predicted gene, 19004
Cpgi15823 5 41754831 to 41754992 161 CpG island CpG island 15823
Cpgi15824 5 41755486 to 41755878 392 CpG island CpG island 15824
Cpgi15825 5 41761214 to 41762414 1200 CpG island CpG island 15825
Nkx3-2 5 41761483 to 41764220 2737 - protein coding gene NK3 homeobox 2
Gm46910 5 41762187 to 41765085 2898 + lncRNA gene predicted gene, 46910
Tssr46071 5 41762653 to 41762664 11 + TSS region transcription start site region 46071
Cpgi15826 5 41763082 to 41764711 1629 CpG island CpG island 15826
Tssr50844 5 41764038 to 41764042 4 - TSS region transcription start site region 50844
Tssr50845 5 41764493 to 41764494 1 - TSS region transcription start site region 50845
Tssr50846 5 41764549 to 41764561 12 - TSS region transcription start site region 50846
Cpgi15827 5 41766706 to 41767833 1127 CpG island CpG island 15827
Tssr46072 5 41767659 to 41767663 4 + TSS region transcription start site region 46072
Cpgi15828 5 41768427 to 41768623 196 CpG island CpG island 15828
D5Mit104 5 41774200 to 41774344 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 104
Bod1l 5 41787538 to 41844315 56777 - protein coding gene biorientation of chromosomes in cell division 1-like