Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:38488859-40188880

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc2a9 5 38349273 to 38503143 153870 - protein coding gene solute carrier family 2 (facilitated glucose transporter), member 9
Tssr50801 5 38491923 to 38491935 12 - TSS region transcription start site region 50801
Tssr50802 5 38491948 to 38491961 13 - TSS region transcription start site region 50802
Tssr46059 5 38500162 to 38500168 6 + TSS region transcription start site region 46059
Tssr50803 5 38502090 to 38502101 11 - TSS region transcription start site region 50803
Tssr50804 5 38502107 to 38502126 19 - TSS region transcription start site region 50804
Tssr50805 5 38502133 to 38502141 8 - TSS region transcription start site region 50805
Tssr46060 5 38505292 to 38505293 1 + TSS region transcription start site region 46060
Gm15796 5 38507463 to 38507666 203 + pseudogene predicted gene 15796
Tssr46061 5 38508057 to 38508075 18 + TSS region transcription start site region 46061
Skts3 5 38509952 to 38510060 108 QTL skin tumor susceptibility 3
D5Mit77 5 38509952 to 38510060 108 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 77
Tssr50806 5 38521489 to 38521498 9 - TSS region transcription start site region 50806
Wdr1 5 38526813 to 38561800 34987 - protein coding gene WD repeat domain 1
Tssr50807 5 38527195 to 38527213 18 - TSS region transcription start site region 50807
Tssr50808 5 38527280 to 38527297 17 - TSS region transcription start site region 50808
Tssr50809 5 38527681 to 38527693 12 - TSS region transcription start site region 50809
Tssr50810 5 38540211 to 38540236 25 - TSS region transcription start site region 50810
Tssr46062 5 38546454 to 38546460 6 + TSS region transcription start site region 46062
Gm22249 5 38546458 to 38546593 135 + snRNA gene predicted gene, 22249
Tssr50811 5 38546463 to 38546472 9 - TSS region transcription start site region 50811
Cpgi15817 5 38560613 to 38562183 1570 CpG island CpG island 15817
Tssr50812 5 38561124 to 38561141 17 - TSS region transcription start site region 50812
Tssr50813 5 38561155 to 38561171 16 - TSS region transcription start site region 50813
Tssr50814 5 38561554 to 38561622 68 - TSS region transcription start site region 50814
Tssr50815 5 38561625 to 38561640 15 - TSS region transcription start site region 50815
Tssr50816 5 38561658 to 38561680 22 - TSS region transcription start site region 50816
Tssr50817 5 38561682 to 38561732 50 - TSS region transcription start site region 50817
Tssr50818 5 38561787 to 38561792 5 - TSS region transcription start site region 50818
Tssr46063 5 38561895 to 38561925 30 + TSS region transcription start site region 46063
Tssr50819 5 38563215 to 38563234 19 - TSS region transcription start site region 50819
Tssr50820 5 38563244 to 38563252 8 - TSS region transcription start site region 50820
4930421P07Rik 5 38575031 to 38575429 398 + pseudogene RIKEN cDNA 4930421P07 gene
Zfp518b 5 38668484 to 38684826 16342 - protein coding gene zinc finger protein 518B
Cpgi15818 5 38684057 to 38685165 1108 CpG island CpG island 15818
Tssr50821 5 38684743 to 38684813 70 - TSS region transcription start site region 50821
Gm40291 5 38684923 to 38706674 21751 + lncRNA gene predicted gene, 40291
Gm22779 5 38699706 to 38699812 106 - snRNA gene predicted gene, 22779
Clnk 5 38706462 to 38876812 170350 - protein coding gene cytokine-dependent hematopoietic cell linker
Gm34720 5 38706768 to 38709550 2782 + lncRNA gene predicted gene, 34720
Clnkos 5 38735983 to 38747897 11914 + antisense lncRNA gene cytokine-dependent hematopoietic cell linker, opposite strand
Tssr50822 5 38771890 to 38771895 5 - TSS region transcription start site region 50822
D5Dmo5 5 38827879 to 38828003 124 DNA segment DNA segment, Chr 5, David Ornitz 5
Tssr50823 5 38876708 to 38876757 49 - TSS region transcription start site region 50823
Tssr50824 5 38936872 to 38936879 7 - TSS region transcription start site region 50824
Gm42857 5 39002693 to 39003031 338 - pseudogene predicted gene 42857
Gm46937 5 39082016 to 39099460 17444 + lncRNA gene predicted gene, 46937
Gm40293 5 39253950 to 39307084 53134 - lincRNA gene predicted gene, 40293
Gm40292 5 39307120 to 39313295 6175 + lincRNA gene predicted gene, 40292
Tssr46064 5 39307123 to 39307133 10 + TSS region transcription start site region 46064
Gm43456 5 39337360 to 39337816 456 - pseudogene predicted gene 43456
Tssr50825 5 39338859 to 39338880 21 - TSS region transcription start site region 50825
Tssr50826 5 39338896 to 39338910 14 - TSS region transcription start site region 50826
Gm25505 5 39346691 to 39346936 245 + unclassified non-coding RNA gene predicted gene, 25505
Gm5291 5 39401347 to 39402245 898 - pseudogene predicted gene 5291
4930421C12Rik 5 39442001 to 39443574 1573 - unclassified gene RIKEN cDNA 4930421C12 gene
Gm42524 5 39458097 to 39477679 19582 + lincRNA gene predicted gene 42524
4930513D17Rik 5 39461749 to 39603574 141825 - lincRNA gene RIKEN cDNA 4930513D17 gene
Gm25377 5 39520976 to 39521104 128 - snoRNA gene predicted gene, 25377
Tssr50827 5 39603521 to 39603536 15 - TSS region transcription start site region 50827
Gm42528 5 39606927 to 39610344 3417 - unclassified gene predicted gene 42528
Hs3st1 5 39613935 to 39645143 31208 - protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 1
Tssr50828 5 39614975 to 39614993 18 - TSS region transcription start site region 50828
Tssr50829 5 39615066 to 39615100 34 - TSS region transcription start site region 50829
Cpgi15819 5 39620755 to 39621220 465 CpG island CpG island 15819
Tssr50830 5 39641867 to 39641894 27 - TSS region transcription start site region 50830
Tssr50831 5 39643825 to 39643865 40 - TSS region transcription start site region 50831
Cpgi15820 5 39644067 to 39645331 1264 CpG island CpG island 15820
Tssr50832 5 39644601 to 39644619 18 - TSS region transcription start site region 50832
Tssr50833 5 39644644 to 39644649 5 - TSS region transcription start site region 50833
D5Dmo6 5 39645528 to 39645697 169 DNA segment DNA segment, Chr 5, David Ornitz 6
Tssr46065 5 39798102 to 39798103 1 + TSS region transcription start site region 46065
Gm7816 5 39798214 to 39799407 1193 + pseudogene predicted pseudogene 7816
Gm35191 5 39975676 to 39985628 9952 - lincRNA gene predicted gene, 35191
D5Dcr42 5 40101001 to 40101097 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 42
D5Mit266 5 40145698 to 40145813 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 266