Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:38226155-38896171

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lyar 5 38220482 to 38234306 13824 + protein coding gene Ly1 antibody reactive clone
Tssr46050 5 38228099 to 38228108 9 + TSS region transcription start site region 46050
Tssr46051 5 38230553 to 38230582 29 + TSS region transcription start site region 46051
Tssr46052 5 38230583 to 38230600 17 + TSS region transcription start site region 46052
Tssr46053 5 38230661 to 38230678 17 + TSS region transcription start site region 46053
Tssr50795 5 38230671 to 38230712 41 - TSS region transcription start site region 50795
Tssr50796 5 38230716 to 38230761 45 - TSS region transcription start site region 50796
Cpgi15811 5 38260070 to 38260688 618 CpG island CpG island 15811
Tmem128 5 38260190 to 38269618 9428 + protein coding gene transmembrane protein 128
Tssr46054 5 38260372 to 38260386 14 + TSS region transcription start site region 46054
Cpgi15812 5 38276209 to 38278385 2176 CpG island CpG island 15812
Tssr46055 5 38277167 to 38277190 23 + TSS region transcription start site region 46055
Tssr46056 5 38277397 to 38277423 26 + TSS region transcription start site region 46056
Otop1 5 38277404 to 38304217 26813 + protein coding gene otopetrin 1
Tssr46057 5 38277445 to 38277464 19 + TSS region transcription start site region 46057
Cpgi15813 5 38299777 to 38300418 641 CpG island CpG island 15813
Cpgi15814 5 38307673 to 38308102 429 CpG island CpG island 15814
Gm34193 5 38313596 to 38316011 2415 + lncRNA gene predicted gene, 34193
Gm26560 5 38317333 to 38320897 3564 - antisense lncRNA gene predicted gene, 26560
Cpgi15815 5 38318851 to 38320805 1954 CpG island CpG island 15815
Drd5 5 38319509 to 38322523 3014 + protein coding gene dopamine receptor D5
Tssr1469 5 38320231 to 38320234 3 + TSS region transcription start site region 1469
Tssr50797 5 38344326 to 38344328 2 - TSS region transcription start site region 50797
Tssr46058 5 38344402 to 38344423 21 + TSS region transcription start site region 46058
4930487D11Rik 5 38344435 to 38349197 4762 + lincRNA gene RIKEN cDNA 4930487D11 gene
Slc2a9 5 38349273 to 38503143 153870 - protein coding gene solute carrier family 2 (facilitated glucose transporter), member 9
Gm40290 5 38354562 to 38362560 7998 + lncRNA gene predicted gene, 40290
D5Dmo4 5 38393052 to 38393278 226 DNA segment DNA segment, Chr 5, David Ornitz 4
Cpgi15816 5 38477277 to 38477535 258 CpG island CpG island 15816
Tssr50798 5 38480153 to 38480239 86 - TSS region transcription start site region 50798
Tssr50799 5 38480252 to 38480259 7 - TSS region transcription start site region 50799
Tssr1470 5 38480261 to 38480270 9 - TSS region transcription start site region 1470
Tssr50800 5 38480283 to 38480295 12 - TSS region transcription start site region 50800
Tssr50801 5 38491923 to 38491935 12 - TSS region transcription start site region 50801
Tssr50802 5 38491948 to 38491961 13 - TSS region transcription start site region 50802
Tssr46059 5 38500162 to 38500168 6 + TSS region transcription start site region 46059
Tssr50803 5 38502090 to 38502101 11 - TSS region transcription start site region 50803
Tssr50804 5 38502107 to 38502126 19 - TSS region transcription start site region 50804
Tssr50805 5 38502133 to 38502141 8 - TSS region transcription start site region 50805
Tssr46060 5 38505292 to 38505293 1 + TSS region transcription start site region 46060
Gm15796 5 38507463 to 38507666 203 + pseudogene predicted gene 15796
Tssr46061 5 38508057 to 38508075 18 + TSS region transcription start site region 46061
D5Mit77 5 38509952 to 38510060 108 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 77
Skts3 5 38509952 to 38510060 108 QTL skin tumor susceptibility 3
Tssr50806 5 38521489 to 38521498 9 - TSS region transcription start site region 50806
Wdr1 5 38526813 to 38561800 34987 - protein coding gene WD repeat domain 1
Tssr50807 5 38527195 to 38527213 18 - TSS region transcription start site region 50807
Tssr50808 5 38527280 to 38527297 17 - TSS region transcription start site region 50808
Tssr50809 5 38527681 to 38527693 12 - TSS region transcription start site region 50809
Tssr50810 5 38540211 to 38540236 25 - TSS region transcription start site region 50810
Tssr46062 5 38546454 to 38546460 6 + TSS region transcription start site region 46062
Gm22249 5 38546458 to 38546593 135 + snRNA gene predicted gene, 22249
Tssr50811 5 38546463 to 38546472 9 - TSS region transcription start site region 50811
Cpgi15817 5 38560613 to 38562183 1570 CpG island CpG island 15817
Tssr50812 5 38561124 to 38561141 17 - TSS region transcription start site region 50812
Tssr50813 5 38561155 to 38561171 16 - TSS region transcription start site region 50813
Tssr50814 5 38561554 to 38561622 68 - TSS region transcription start site region 50814
Tssr50815 5 38561625 to 38561640 15 - TSS region transcription start site region 50815
Tssr50816 5 38561658 to 38561680 22 - TSS region transcription start site region 50816
Tssr50817 5 38561682 to 38561732 50 - TSS region transcription start site region 50817
Tssr50818 5 38561787 to 38561792 5 - TSS region transcription start site region 50818
Tssr46063 5 38561895 to 38561925 30 + TSS region transcription start site region 46063
Tssr50819 5 38563215 to 38563234 19 - TSS region transcription start site region 50819
Tssr50820 5 38563244 to 38563252 8 - TSS region transcription start site region 50820
4930421P07Rik 5 38575031 to 38575429 398 + pseudogene RIKEN cDNA 4930421P07 gene
Zfp518b 5 38668484 to 38684826 16342 - protein coding gene zinc finger protein 518B
Cpgi15818 5 38684057 to 38685165 1108 CpG island CpG island 15818
Tssr50821 5 38684743 to 38684813 70 - TSS region transcription start site region 50821
Gm40291 5 38684923 to 38706674 21751 + lncRNA gene predicted gene, 40291
Gm22779 5 38699706 to 38699812 106 - snRNA gene predicted gene, 22779
Clnk 5 38706462 to 38876812 170350 - protein coding gene cytokine-dependent hematopoietic cell linker
Gm34720 5 38706768 to 38709550 2782 + lncRNA gene predicted gene, 34720
Clnkos 5 38735983 to 38747897 11914 + antisense lncRNA gene cytokine-dependent hematopoietic cell linker, opposite strand
Tssr50822 5 38771890 to 38771895 5 - TSS region transcription start site region 50822
D5Dmo5 5 38827879 to 38828003 124 DNA segment DNA segment, Chr 5, David Ornitz 5
Tssr50823 5 38876708 to 38876757 49 - TSS region transcription start site region 50823