Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:37819273-39033143

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Msx1 5 37820491 to 37824585 4094 - protein coding gene msh homeobox 1
Msx1os 5 37820564 to 37822751 2187 + antisense lncRNA gene msh homeobox 1 opposite strand
Cpgi15801 5 37821184 to 37821679 495 CpG island CpG island 15801
Cpgi15802 5 37822994 to 37824862 1868 CpG island CpG island 15802
Tssr50784 5 37824580 to 37824584 4 - TSS region transcription start site region 50784
Gm33993 5 37825755 to 37852040 26285 + lncRNA gene predicted gene, 33993
Cpgi15803 5 37825814 to 37826119 305 CpG island CpG island 15803
Cpgi15804 5 37826622 to 37827719 1097 CpG island CpG island 15804
Cpgi15805 5 37828900 to 37829182 282 CpG island CpG island 15805
Gm40288 5 37831915 to 37835533 3618 - lncRNA gene predicted gene, 40288
Cpgi15806 5 37875370 to 37875592 222 CpG island CpG island 15806
Cpgi15807 5 37893716 to 37894024 308 CpG island CpG island 15807
Gm20052 5 37893772 to 37897917 4145 + lincRNA gene predicted gene, 20052
D5Mit390 5 37936489 to 37936609 120 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 390
1700061D14Rik 5 37969956 to 37983600 13644 unclassified gene RIKEN cDNA 1700061D14 gene
Tssr46036 5 37983685 to 37983694 9 + TSS region transcription start site region 46036
Gm40289 5 37983693 to 37986070 2377 + lincRNA gene predicted gene, 40289
Tssr1468 5 37983708 to 37983720 12 + TSS region transcription start site region 1468
Gm43762 5 38027715 to 38028009 294 - unclassified gene predicted gene 43762
Stx18 5 38038742 to 38137765 99023 + protein coding gene syntaxin 18
Cpgi15808 5 38038923 to 38039889 966 CpG island CpG island 15808
Tssr46037 5 38039197 to 38039219 22 + TSS region transcription start site region 46037
Tssr46038 5 38039224 to 38039299 75 + TSS region transcription start site region 46038
Tssr46039 5 38039304 to 38039322 18 + TSS region transcription start site region 46039
Tssr46040 5 38076497 to 38076508 11 + TSS region transcription start site region 46040
Tssr46041 5 38076519 to 38076534 15 + TSS region transcription start site region 46041
Tssr46042 5 38076563 to 38076572 9 + TSS region transcription start site region 46042
D5Dmo2 5 38086438 to 38086558 120 DNA segment DNA segment, Chr 5, David Ornitz 2
Tssr46043 5 38108142 to 38108150 8 + TSS region transcription start site region 46043
D5Wsu148e 5 38128456 to 38128705 249 DNA segment DNA segment, Chr 5, Wayne State University 148, expressed
Gm42858 5 38134394 to 38136097 1703 - unclassified gene predicted gene 42858
Nsg1 5 38137192 to 38159467 22275 - protein coding gene neuron specific gene family member 1
Cpgi15809 5 38158691 to 38160352 1661 CpG island CpG island 15809
Tssr50785 5 38158911 to 38158921 10 - TSS region transcription start site region 50785
Tssr50786 5 38158984 to 38158995 11 - TSS region transcription start site region 50786
Tssr50787 5 38159407 to 38159454 47 - TSS region transcription start site region 50787
Tssr50788 5 38159457 to 38159491 34 - TSS region transcription start site region 50788
Tssr50789 5 38159499 to 38159517 18 - TSS region transcription start site region 50789
Tssr50790 5 38159539 to 38159546 7 - TSS region transcription start site region 50790
Tssr50791 5 38159565 to 38159578 13 - TSS region transcription start site region 50791
Tssr50792 5 38159724 to 38159743 19 - TSS region transcription start site region 50792
D5Dmo3 5 38167229 to 38167327 98 DNA segment DNA segment, Chr 5, David Ornitz 3
Zbtb49 5 38189732 to 38220449 30717 - protein coding gene zinc finger and BTB domain containing 49
Cpgi15810 5 38219759 to 38221039 1280 CpG island CpG island 15810
Tssr46044 5 38219960 to 38219970 10 + TSS region transcription start site region 46044
Tssr50793 5 38220382 to 38220396 14 - TSS region transcription start site region 50793
Tssr50794 5 38220400 to 38220459 59 - TSS region transcription start site region 50794
Tssr46045 5 38220481 to 38220560 79 + TSS region transcription start site region 46045
Lyar 5 38220482 to 38234306 13824 + protein coding gene Ly1 antibody reactive clone
Tssr46046 5 38220577 to 38220588 11 + TSS region transcription start site region 46046
Tssr46047 5 38220592 to 38220603 11 + TSS region transcription start site region 46047
Tssr46048 5 38220628 to 38220649 21 + TSS region transcription start site region 46048
Tssr46049 5 38225886 to 38225899 13 + TSS region transcription start site region 46049
Tssr46050 5 38228099 to 38228108 9 + TSS region transcription start site region 46050
Tssr46051 5 38230553 to 38230582 29 + TSS region transcription start site region 46051
Tssr46052 5 38230583 to 38230600 17 + TSS region transcription start site region 46052
Tssr46053 5 38230661 to 38230678 17 + TSS region transcription start site region 46053
Tssr50795 5 38230671 to 38230712 41 - TSS region transcription start site region 50795
Tssr50796 5 38230716 to 38230761 45 - TSS region transcription start site region 50796
Cpgi15811 5 38260070 to 38260688 618 CpG island CpG island 15811
Tmem128 5 38260190 to 38269618 9428 + protein coding gene transmembrane protein 128
Tssr46054 5 38260372 to 38260386 14 + TSS region transcription start site region 46054
Cpgi15812 5 38276209 to 38278385 2176 CpG island CpG island 15812
Tssr46055 5 38277167 to 38277190 23 + TSS region transcription start site region 46055
Tssr46056 5 38277397 to 38277423 26 + TSS region transcription start site region 46056
Otop1 5 38277404 to 38304217 26813 + protein coding gene otopetrin 1
Tssr46057 5 38277445 to 38277464 19 + TSS region transcription start site region 46057
Cpgi15813 5 38299777 to 38300418 641 CpG island CpG island 15813
Cpgi15814 5 38307673 to 38308102 429 CpG island CpG island 15814
Gm34193 5 38313596 to 38316011 2415 + lncRNA gene predicted gene, 34193
Gm26560 5 38317333 to 38320897 3564 - antisense lncRNA gene predicted gene, 26560
Cpgi15815 5 38318851 to 38320805 1954 CpG island CpG island 15815
Drd5 5 38319509 to 38322523 3014 + protein coding gene dopamine receptor D5
Tssr1469 5 38320231 to 38320234 3 + TSS region transcription start site region 1469
Tssr50797 5 38344326 to 38344328 2 - TSS region transcription start site region 50797
Tssr46058 5 38344402 to 38344423 21 + TSS region transcription start site region 46058
4930487D11Rik 5 38344435 to 38349197 4762 + lincRNA gene RIKEN cDNA 4930487D11 gene
Slc2a9 5 38349273 to 38503143 153870 - protein coding gene solute carrier family 2 (facilitated glucose transporter), member 9
Gm40290 5 38354562 to 38362560 7998 + lncRNA gene predicted gene, 40290
D5Dmo4 5 38393052 to 38393278 226 DNA segment DNA segment, Chr 5, David Ornitz 4
Cpgi15816 5 38477277 to 38477535 258 CpG island CpG island 15816
Tssr50798 5 38480153 to 38480239 86 - TSS region transcription start site region 50798
Tssr50799 5 38480252 to 38480259 7 - TSS region transcription start site region 50799
Tssr1470 5 38480261 to 38480270 9 - TSS region transcription start site region 1470
Tssr50800 5 38480283 to 38480295 12 - TSS region transcription start site region 50800
Tssr50801 5 38491923 to 38491935 12 - TSS region transcription start site region 50801
Tssr50802 5 38491948 to 38491961 13 - TSS region transcription start site region 50802
Tssr46059 5 38500162 to 38500168 6 + TSS region transcription start site region 46059
Tssr50803 5 38502090 to 38502101 11 - TSS region transcription start site region 50803
Tssr50804 5 38502107 to 38502126 19 - TSS region transcription start site region 50804
Tssr50805 5 38502133 to 38502141 8 - TSS region transcription start site region 50805
Tssr46060 5 38505292 to 38505293 1 + TSS region transcription start site region 46060
Gm15796 5 38507463 to 38507666 203 + pseudogene predicted gene 15796
Tssr46061 5 38508057 to 38508075 18 + TSS region transcription start site region 46061
D5Mit77 5 38509952 to 38510060 108 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 77
Skts3 5 38509952 to 38510060 108 QTL skin tumor susceptibility 3
Tssr50806 5 38521489 to 38521498 9 - TSS region transcription start site region 50806
Wdr1 5 38526813 to 38561800 34987 - protein coding gene WD repeat domain 1
Tssr50807 5 38527195 to 38527213 18 - TSS region transcription start site region 50807
Tssr50808 5 38527280 to 38527297 17 - TSS region transcription start site region 50808
Tssr50809 5 38527681 to 38527693 12 - TSS region transcription start site region 50809
Tssr50810 5 38540211 to 38540236 25 - TSS region transcription start site region 50810
Tssr46062 5 38546454 to 38546460 6 + TSS region transcription start site region 46062
Gm22249 5 38546458 to 38546593 135 + snRNA gene predicted gene, 22249
Tssr50811 5 38546463 to 38546472 9 - TSS region transcription start site region 50811
Cpgi15817 5 38560613 to 38562183 1570 CpG island CpG island 15817
Tssr50812 5 38561124 to 38561141 17 - TSS region transcription start site region 50812
Tssr50813 5 38561155 to 38561171 16 - TSS region transcription start site region 50813
Tssr50814 5 38561554 to 38561622 68 - TSS region transcription start site region 50814
Tssr50815 5 38561625 to 38561640 15 - TSS region transcription start site region 50815
Tssr50816 5 38561658 to 38561680 22 - TSS region transcription start site region 50816
Tssr50817 5 38561682 to 38561732 50 - TSS region transcription start site region 50817
Tssr50818 5 38561787 to 38561792 5 - TSS region transcription start site region 50818
Tssr46063 5 38561895 to 38561925 30 + TSS region transcription start site region 46063
Tssr50819 5 38563215 to 38563234 19 - TSS region transcription start site region 50819
Tssr50820 5 38563244 to 38563252 8 - TSS region transcription start site region 50820
4930421P07Rik 5 38575031 to 38575429 398 + pseudogene RIKEN cDNA 4930421P07 gene
Zfp518b 5 38668484 to 38684826 16342 - protein coding gene zinc finger protein 518B
Cpgi15818 5 38684057 to 38685165 1108 CpG island CpG island 15818
Tssr50821 5 38684743 to 38684813 70 - TSS region transcription start site region 50821
Gm40291 5 38684923 to 38706674 21751 + lncRNA gene predicted gene, 40291
Gm22779 5 38699706 to 38699812 106 - snRNA gene predicted gene, 22779
Clnk 5 38706462 to 38876812 170350 - protein coding gene cytokine-dependent hematopoietic cell linker
Gm34720 5 38706768 to 38709550 2782 + lncRNA gene predicted gene, 34720
Clnkos 5 38735983 to 38747897 11914 + antisense lncRNA gene cytokine-dependent hematopoietic cell linker, opposite strand
Tssr50822 5 38771890 to 38771895 5 - TSS region transcription start site region 50822
D5Dmo5 5 38827879 to 38828003 124 DNA segment DNA segment, Chr 5, David Ornitz 5
Tssr50823 5 38876708 to 38876757 49 - TSS region transcription start site region 50823
Tssr50824 5 38936872 to 38936879 7 - TSS region transcription start site region 50824
Gm42857 5 39002693 to 39003031 338 - pseudogene predicted gene 42857