Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:37375519-38099820

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Evc2 5 37338499 to 37425055 86556 + protein coding gene EvC ciliary complex subunit 2
Tssr46030 5 37392014 to 37392019 5 + TSS region transcription start site region 46030
Gm15732 5 37404384 to 37404863 479 - pseudogene predicted gene 15732
Tssr46031 5 37417491 to 37417495 4 + TSS region transcription start site region 46031
Tssr1466 5 37419166 to 37419176 10 + TSS region transcription start site region 1466
D5Mit13 5 37424144 to 37424334 190 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 13
Hpi2 5 37424144 to 64649236 27225092 QTL hepatic PMN infiltration 2
Tssr50779 5 37434754 to 37434761 7 - TSS region transcription start site region 50779
Stk32b 5 37446825 to 37717153 270328 - protein coding gene serine/threonine kinase 32B
Tssr50780 5 37448445 to 37448452 7 - TSS region transcription start site region 50780
Tssr1467 5 37469647 to 37469648 1 + TSS region transcription start site region 1467
Tssr46032 5 37486998 to 37487003 5 + TSS region transcription start site region 46032
D5Mit182 5 37529649 to 37529790 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 182
Iba5 5 37529649 to 37529790 141 QTL induction of brown adipocytes 5
Tssr50781 5 37624830 to 37624850 20 - TSS region transcription start site region 50781
D5Mit354 5 37647595 to 37647780 185 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 354
Cpgi15798 5 37716586 to 37717349 763 CpG island CpG island 15798
Tssr50782 5 37717122 to 37717178 56 - TSS region transcription start site region 50782
Tssr50783 5 37717194 to 37717205 11 - TSS region transcription start site region 50783
Cytl1 5 37735519 to 37739820 4301 + protein coding gene cytokine-like 1
Tssr46033 5 37735526 to 37735545 19 + TSS region transcription start site region 46033
Tssr46034 5 37735612 to 37735630 18 + TSS region transcription start site region 46034
Tssr46035 5 37737273 to 37737282 9 + TSS region transcription start site region 46035
D5Mit421 5 37743306 to 37743425 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 421
Gm40286 5 37748095 to 37774165 26070 - lncRNA gene predicted gene, 40286
Gm43763 5 37807306 to 37808078 772 + lincRNA gene predicted gene 43763
Cpgi15799 5 37816823 to 37817823 1000 CpG island CpG island 15799
Cpgi15800 5 37818352 to 37818716 364 CpG island CpG island 15800
Msx1 5 37820491 to 37824585 4094 - protein coding gene msh homeobox 1
Msx1os 5 37820564 to 37822751 2187 + antisense lncRNA gene msh homeobox 1 opposite strand
Cpgi15801 5 37821184 to 37821679 495 CpG island CpG island 15801
Cpgi15802 5 37822994 to 37824862 1868 CpG island CpG island 15802
Tssr50784 5 37824580 to 37824584 4 - TSS region transcription start site region 50784
Gm33993 5 37825755 to 37852040 26285 + lncRNA gene predicted gene, 33993
Cpgi15803 5 37825814 to 37826119 305 CpG island CpG island 15803
Cpgi15804 5 37826622 to 37827719 1097 CpG island CpG island 15804
Cpgi15805 5 37828900 to 37829182 282 CpG island CpG island 15805
Gm40288 5 37831915 to 37835533 3618 - lncRNA gene predicted gene, 40288
Cpgi15806 5 37875370 to 37875592 222 CpG island CpG island 15806
Cpgi15807 5 37893716 to 37894024 308 CpG island CpG island 15807
Gm20052 5 37893772 to 37897917 4145 + lincRNA gene predicted gene, 20052
D5Mit390 5 37936489 to 37936609 120 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 390
1700061D14Rik 5 37969956 to 37983600 13644 unclassified gene RIKEN cDNA 1700061D14 gene
Tssr46036 5 37983685 to 37983694 9 + TSS region transcription start site region 46036
Gm40289 5 37983693 to 37986070 2377 + lincRNA gene predicted gene, 40289
Tssr1468 5 37983708 to 37983720 12 + TSS region transcription start site region 1468
Gm43762 5 38027715 to 38028009 294 - unclassified gene predicted gene 43762
Stx18 5 38038742 to 38137765 99023 + protein coding gene syntaxin 18
Cpgi15808 5 38038923 to 38039889 966 CpG island CpG island 15808
Tssr46037 5 38039197 to 38039219 22 + TSS region transcription start site region 46037
Tssr46038 5 38039224 to 38039299 75 + TSS region transcription start site region 46038
Tssr46039 5 38039304 to 38039322 18 + TSS region transcription start site region 46039
Tssr46040 5 38076497 to 38076508 11 + TSS region transcription start site region 46040
Tssr46041 5 38076519 to 38076534 15 + TSS region transcription start site region 46041
Tssr46042 5 38076563 to 38076572 9 + TSS region transcription start site region 46042
D5Dmo2 5 38086438 to 38086558 120 DNA segment DNA segment, Chr 5, David Ornitz 2
Lmb2 5 112317856 to 37424144 -74893712 QTL lupus in MRL and B6 F2 cross, QTL 2