Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:36208701-37031255

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5D5Mit73-D5Mit351)5Jcs 5 26600987 to 37019120 10418133 chromosomal deletion deletion, Chr 5, John C. Schimenti 5
Del(5D5Mit73-D5Mit351)1J 5 26600987 to 37019120 10418133 chromosomal deletion deletion Chr 5, Jackson 1
Del(5D5Mit388-D5Mit351)4Jcs 5 33318099 to 37019120 3701021 chromosomal deletion deletion, Chr 5, John C. Schimenti 4
Sorcs2 5 36017180 to 36398139 380959 - protein coding gene sortilin-related VPS10 domain containing receptor 2
D5Jcs33 5 36230156 to 36230305 149 DNA segment DNA segment, Chr 5, John C. Schimenti 33
Tssr45978 5 36237717 to 36237727 10 + TSS region transcription start site region 45978
Tssr45979 5 36237741 to 36237782 41 + TSS region transcription start site region 45979
D5Jcs34 5 36259517 to 36259667 150 DNA segment DNA segment, Chr 5, John C. Schimenti 34
Tssr50725 5 36277756 to 36277769 13 - TSS region transcription start site region 50725
Mir7689 5 36301570 to 36301628 58 + miRNA gene microRNA 7689
D5Mit75 5 36304140 to 36304289 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 75
Tssr50726 5 36317547 to 36317550 3 - TSS region transcription start site region 50726
Tssr50727 5 36321635 to 36321648 13 - TSS region transcription start site region 50727
D5Jcs76 5 36328573 to 36328725 152 DNA segment DNA segment, Chr 5, John C. Schimenti 76
D5Jcs30 5 36340597 to 36340808 211 DNA segment DNA segment, Chr 5, John C. Schimenti 30
D5Jcs31 5 36355103 to 36355261 158 DNA segment DNA segment, Chr 5, John C. Schimenti 31
Tssr45980 5 36374658 to 36374698 40 + TSS region transcription start site region 45980
Tssr45981 5 36374874 to 36374883 9 + TSS region transcription start site region 45981
Tssr50728 5 36376938 to 36376981 43 - TSS region transcription start site region 50728
Cpgi15777 5 36397229 to 36398655 1426 CpG island CpG island 15777
Tssr50729 5 36397671 to 36397706 35 - TSS region transcription start site region 50729
Tssr50730 5 36398060 to 36398063 3 - TSS region transcription start site region 50730
Tssr50731 5 36398068 to 36398075 7 - TSS region transcription start site region 50731
Tssr50732 5 36398078 to 36398085 7 - TSS region transcription start site region 50732
Tssr50733 5 36398090 to 36398149 59 - TSS region transcription start site region 50733
D5Jcs32 5 36414526 to 36414680 154 DNA segment DNA segment, Chr 5, John C. Schimenti 32
2210406O10Rik 5 36447611 to 36464853 17242 - lincRNA gene RIKEN cDNA 2210406O10 gene
D5Mit288 5 36450901 to 36451015 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 288
D5Ertd521e 5 36463635 to 36463859 224 DNA segment DNA segment, Chr 5, ERATO Doi 521, expressed
Cpgi15778 5 36464413 to 36465646 1233 CpG island CpG island 15778
Tssr45982 5 36464792 to 36464797 5 + TSS region transcription start site region 45982
Tssr45983 5 36465158 to 36465196 38 + TSS region transcription start site region 45983
Grpel1 5 36465185 to 36474077 8892 + protein coding gene GrpE-like 1, mitochondrial
Tada2b 5 36473670 to 36484285 10615 - protein coding gene transcriptional adaptor 2B
Cpgi15779 5 36483299 to 36486204 2905 CpG island CpG island 15779
Tssr50734 5 36484234 to 36484302 68 - TSS region transcription start site region 50734
Tssr45984 5 36484578 to 36484620 42 + TSS region transcription start site region 45984
Ccdc96 5 36484588 to 36488171 3583 + protein coding gene coiled-coil domain containing 96
Tssr45985 5 36484623 to 36484634 11 + TSS region transcription start site region 45985
Tbc1d14 5 36490604 to 36586271 95667 - protein coding gene TBC1 domain family, member 14
Gm32528 5 36508511 to 36512447 3936 - lncRNA gene predicted gene, 32528
Tssr50735 5 36509371 to 36509380 9 - TSS region transcription start site region 50735
Cpgi15780 5 36530238 to 36530683 445 CpG island CpG island 15780
Tssr50736 5 36530489 to 36530587 98 - TSS region transcription start site region 50736
Tssr50737 5 36530610 to 36530629 19 - TSS region transcription start site region 50737
Tssr1462 5 36553290 to 36553297 7 - TSS region transcription start site region 1462
Tssr50738 5 36553322 to 36553358 36 - TSS region transcription start site region 50738
Tssr50739 5 36554041 to 36554051 10 - TSS region transcription start site region 50739
Tssr50740 5 36566562 to 36566567 5 - TSS region transcription start site region 50740
Cpgi15781 5 36581365 to 36582645 1280 CpG island CpG island 15781
Tssr50741 5 36581792 to 36581809 17 - TSS region transcription start site region 50741
Tssr50742 5 36581815 to 36581845 30 - TSS region transcription start site region 50742
Tssr50743 5 36582381 to 36582399 18 - TSS region transcription start site region 50743
Gm42936 5 36584788 to 36613739 28951 - unclassified non-coding RNA gene predicted gene 42936
Tssr50744 5 36586219 to 36586229 10 - TSS region transcription start site region 50744
Tssr50745 5 36586239 to 36586248 9 - TSS region transcription start site region 50745
D5Ertd579e 5 36600485 to 36696024 95539 - protein coding gene DNA segment, Chr 5, ERATO Doi 579, expressed
Tssr50746 5 36611740 to 36611746 6 - TSS region transcription start site region 50746
Gm42507 5 36618701 to 36621255 2554 + unclassified gene predicted gene 42507
Tssr50747 5 36621267 to 36621279 12 - TSS region transcription start site region 50747
Gm32584 5 36630164 to 36661658 31494 - protein coding gene predicted gene, 32584
Gm24878 5 36666409 to 36666512 103 - snRNA gene predicted gene, 24878
Gm25767 5 36671658 to 36671781 123 + snoRNA gene predicted gene, 25767
Cpgi15782 5 36695161 to 36696342 1181 CpG island CpG island 15782
Tssr45986 5 36695793 to 36695798 5 + TSS region transcription start site region 45986
Tssr50748 5 36695992 to 36696041 49 - TSS region transcription start site region 50748
Tssr50749 5 36696056 to 36696068 12 - TSS region transcription start site region 50749
Tssr50750 5 36696574 to 36696603 29 - TSS region transcription start site region 50750
Tssr50751 5 36696624 to 36696686 62 - TSS region transcription start site region 50751
Tssr50752 5 36696697 to 36696731 34 - TSS region transcription start site region 50752
Tssr50753 5 36696745 to 36696758 13 - TSS region transcription start site region 50753
Gm32725 5 36698234 to 36716213 17979 - lncRNA gene predicted gene, 32725
Tssr50754 5 36711982 to 36712029 47 - TSS region transcription start site region 50754
Tssr50755 5 36712110 to 36712111 1 - TSS region transcription start site region 50755
Tssr50756 5 36713110 to 36713142 32 - TSS region transcription start site region 50756
Cpgi15783 5 36713229 to 36713489 260 CpG island CpG island 15783
Tssr50757 5 36713257 to 36713295 38 - TSS region transcription start site region 50757
Tssr50758 5 36713336 to 36713399 63 - TSS region transcription start site region 50758
Gm33017 5 36718746 to 36723708 4962 + lncRNA gene predicted gene, 33017
Tssr50759 5 36720813 to 36720818 5 - TSS region transcription start site region 50759
Gm33114 5 36730055 to 36732200 2145 + lncRNA gene predicted gene, 33114
Cpgi15784 5 36742379 to 36742554 175 CpG island CpG island 15784
Bloc1s4 5 36747378 to 36748650 1272 - protein coding gene biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino
Cpgi15785 5 36747807 to 36748893 1086 CpG island CpG island 15785
Tssr45987 5 36748597 to 36748620 23 + TSS region transcription start site region 45987
Gm43701 5 36748618 to 36750437 1819 + antisense lncRNA gene predicted gene 43701
Tssr50760 5 36748639 to 36748694 55 - TSS region transcription start site region 50760
Gm40318 5 36762617 to 36766695 4078 - protein coding gene predicted gene, 40318
Tssr50761 5 36767395 to 36767437 42 - TSS region transcription start site region 50761
Mrfap1 5 36794867 to 36796754 1887 - protein coding gene Morf4 family associated protein 1
Tssr50762 5 36795835 to 36795841 6 - TSS region transcription start site region 50762
Cpgi15786 5 36795943 to 36797204 1261 CpG island CpG island 15786
Tssr45988 5 36796491 to 36796522 31 + TSS region transcription start site region 45988
Tssr50763 5 36796703 to 36796706 3 - TSS region transcription start site region 50763
Tssr50764 5 36796722 to 36796744 22 - TSS region transcription start site region 50764
Man2b2 5 36806921 to 36830653 23732 - protein coding gene mannosidase 2, alpha B2
Tssr50765 5 36807858 to 36807870 12 - TSS region transcription start site region 50765
Tssr50766 5 36815525 to 36815557 32 - TSS region transcription start site region 50766
Tssr50767 5 36816173 to 36816188 15 - TSS region transcription start site region 50767
Tssr50768 5 36821870 to 36821880 10 - TSS region transcription start site region 50768
Tssr50769 5 36825631 to 36825645 14 - TSS region transcription start site region 50769
Tssr50770 5 36826116 to 36826132 16 - TSS region transcription start site region 50770
Tssr50771 5 36827307 to 36827319 12 - TSS region transcription start site region 50771
Tssr50772 5 36827916 to 36827927 11 - TSS region transcription start site region 50772
Cpgi15787 5 36830116 to 36830879 763 CpG island CpG island 15787
Tssr50773 5 36830573 to 36830646 73 - TSS region transcription start site region 50773
Tssr50774 5 36830647 to 36830657 10 - TSS region transcription start site region 50774
Tssr45989 5 36867646 to 36867659 13 + TSS region transcription start site region 45989
Cpgi15788 5 36867870 to 36870624 2754 CpG island CpG island 15788
Tssr45990 5 36868467 to 36868560 93 + TSS region transcription start site region 45990
Ppp2r2c 5 36868513 to 36955078 86565 + protein coding gene protein phosphatase 2, regulatory subunit B, gamma
Tssr45991 5 36868584 to 36868685 101 + TSS region transcription start site region 45991
Tssr45992 5 36868693 to 36868716 23 + TSS region transcription start site region 45992
Ppp2r2cos 5 36873595 to 36876879 3284 - antisense lncRNA gene protein phosphatase 2, regulatory subunit B, gamma, opposite strand
D5Mit230.3 5 36879934 to 36880047 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 230.3
D5Mit230 5 36880029 to 36880164 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 230
D5Jcs40 5 36883909 to 36884066 157 DNA segment DNA segment, Chr 5, John C. Schimenti 40
D5Jcs41 5 36892986 to 36893133 147 DNA segment DNA segment, Chr 5, John C. Schimenti 41
D5Jcs42 5 36895280 to 36895429 149 DNA segment DNA segment, Chr 5, John C. Schimenti 42
Cpgi15789 5 36909673 to 36909940 267 CpG island CpG island 15789
Gm42506 5 36910114 to 36910263 149 + unclassified gene predicted gene 42506
Tssr45993 5 36923000 to 36923011 11 + TSS region transcription start site region 45993
Tssr45994 5 36936527 to 36936528 1 + TSS region transcription start site region 45994
Tssr45995 5 36954053 to 36954058 5 + TSS region transcription start site region 45995
Wfs1 5 36966104 to 36988982 22878 - protein coding gene wolframin ER transmembrane glycoprotein
D5Dmo1 5 36966691 to 36966851 160 DNA segment DNA segment, Chr 5, David Ornitz 1
Cpgi15790 5 36988414 to 36989456 1042 CpG island CpG island 15790
Tssr50775 5 36988922 to 36988970 48 - TSS region transcription start site region 50775
D5Mit351 5 37019013 to 37019120 107 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 351
D5Mit351.1 5 37019182 to 37019314 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 351.1
Cpgi15791 5 37027909 to 37029835 1926 CpG island CpG island 15791
Tssr45996 5 37028317 to 37028328 11 + TSS region transcription start site region 45996
Tssr45997 5 37028329 to 37028376 47 + TSS region transcription start site region 45997
Jakmip1 5 37028335 to 37150607 122272 + protein coding gene janus kinase and microtubule interacting protein 1
Tssr45998 5 37028458 to 37028491 33 + TSS region transcription start site region 45998