Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:35959140-36649289

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Afap1 5 35893319 to 36003923 110604 + protein coding gene actin filament associated protein 1
Tssr45970 5 36000354 to 36000359 5 + TSS region transcription start site region 45970
Tssr45971 5 36002046 to 36002090 44 + TSS region transcription start site region 45971
Tssr45972 5 36003402 to 36003412 10 + TSS region transcription start site region 45972
Sorcs2 5 36017180 to 36398139 380959 - protein coding gene sortilin-related VPS10 domain containing receptor 2
Tssr50719 5 36036958 to 36036974 16 - TSS region transcription start site region 50719
Tssr50720 5 36036974 to 36036994 20 - TSS region transcription start site region 50720
Tssr50721 5 36037029 to 36037041 12 - TSS region transcription start site region 50721
Tssr45973 5 36048655 to 36048660 5 + TSS region transcription start site region 45973
D5Ertd422e 5 36110746 to 36110979 233 DNA segment DNA segment, Chr 5, ERATO Doi 422, expressed
Tssr50722 5 36146790 to 36146794 4 - TSS region transcription start site region 50722
Tssr50723 5 36152928 to 36152958 30 - TSS region transcription start site region 50723
Tssr45974 5 36164040 to 36164044 4 + TSS region transcription start site region 45974
Gm32183 5 36164922 to 36165988 1066 + lncRNA gene predicted gene, 32183
Tssr50724 5 36165012 to 36165021 9 - TSS region transcription start site region 50724
Gm32119 5 36178563 to 36179281 718 - lncRNA gene predicted gene, 32119
Gm31945 5 36179449 to 36189567 10118 + lncRNA gene predicted gene, 31945
Tssr45975 5 36204016 to 36204027 11 + TSS region transcription start site region 45975
Psapl1 5 36204021 to 36206568 2547 + protein coding gene prosaposin-like 1
Tssr45976 5 36204036 to 36204043 7 + TSS region transcription start site region 45976
Tssr45977 5 36204047 to 36204063 16 + TSS region transcription start site region 45977
D5Jcs33 5 36230156 to 36230305 149 DNA segment DNA segment, Chr 5, John C. Schimenti 33
Tssr45978 5 36237717 to 36237727 10 + TSS region transcription start site region 45978
Tssr45979 5 36237741 to 36237782 41 + TSS region transcription start site region 45979
D5Jcs34 5 36259517 to 36259667 150 DNA segment DNA segment, Chr 5, John C. Schimenti 34
Tssr50725 5 36277756 to 36277769 13 - TSS region transcription start site region 50725
Mir7689 5 36301570 to 36301628 58 + miRNA gene microRNA 7689
D5Mit75 5 36304140 to 36304289 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 75
Tssr50726 5 36317547 to 36317550 3 - TSS region transcription start site region 50726
Tssr50727 5 36321635 to 36321648 13 - TSS region transcription start site region 50727
D5Jcs76 5 36328573 to 36328725 152 DNA segment DNA segment, Chr 5, John C. Schimenti 76
D5Jcs30 5 36340597 to 36340808 211 DNA segment DNA segment, Chr 5, John C. Schimenti 30
D5Jcs31 5 36355103 to 36355261 158 DNA segment DNA segment, Chr 5, John C. Schimenti 31
Tssr45980 5 36374658 to 36374698 40 + TSS region transcription start site region 45980
Tssr45981 5 36374874 to 36374883 9 + TSS region transcription start site region 45981
Tssr50728 5 36376938 to 36376981 43 - TSS region transcription start site region 50728
Cpgi15777 5 36397229 to 36398655 1426 CpG island CpG island 15777
Tssr50729 5 36397671 to 36397706 35 - TSS region transcription start site region 50729
Tssr50730 5 36398060 to 36398063 3 - TSS region transcription start site region 50730
Tssr50731 5 36398068 to 36398075 7 - TSS region transcription start site region 50731
Tssr50732 5 36398078 to 36398085 7 - TSS region transcription start site region 50732
Tssr50733 5 36398090 to 36398149 59 - TSS region transcription start site region 50733
D5Jcs32 5 36414526 to 36414680 154 DNA segment DNA segment, Chr 5, John C. Schimenti 32
2210406O10Rik 5 36447611 to 36464853 17242 - lincRNA gene RIKEN cDNA 2210406O10 gene
D5Mit288 5 36450901 to 36451015 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 288
D5Ertd521e 5 36463635 to 36463859 224 DNA segment DNA segment, Chr 5, ERATO Doi 521, expressed
Cpgi15778 5 36464413 to 36465646 1233 CpG island CpG island 15778
Tssr45982 5 36464792 to 36464797 5 + TSS region transcription start site region 45982
Tssr45983 5 36465158 to 36465196 38 + TSS region transcription start site region 45983
Grpel1 5 36465185 to 36474077 8892 + protein coding gene GrpE-like 1, mitochondrial
Tada2b 5 36473670 to 36484285 10615 - protein coding gene transcriptional adaptor 2B
Cpgi15779 5 36483299 to 36486204 2905 CpG island CpG island 15779
Tssr50734 5 36484234 to 36484302 68 - TSS region transcription start site region 50734
Tssr45984 5 36484578 to 36484620 42 + TSS region transcription start site region 45984
Ccdc96 5 36484588 to 36488171 3583 + protein coding gene coiled-coil domain containing 96
Tssr45985 5 36484623 to 36484634 11 + TSS region transcription start site region 45985
Tbc1d14 5 36490604 to 36586271 95667 - protein coding gene TBC1 domain family, member 14
Gm32528 5 36508511 to 36512447 3936 - lncRNA gene predicted gene, 32528
Tssr50735 5 36509371 to 36509380 9 - TSS region transcription start site region 50735
Cpgi15780 5 36530238 to 36530683 445 CpG island CpG island 15780
Tssr50736 5 36530489 to 36530587 98 - TSS region transcription start site region 50736
Tssr50737 5 36530610 to 36530629 19 - TSS region transcription start site region 50737
Tssr1462 5 36553290 to 36553297 7 - TSS region transcription start site region 1462
Tssr50738 5 36553322 to 36553358 36 - TSS region transcription start site region 50738
Tssr50739 5 36554041 to 36554051 10 - TSS region transcription start site region 50739
Tssr50740 5 36566562 to 36566567 5 - TSS region transcription start site region 50740
Cpgi15781 5 36581365 to 36582645 1280 CpG island CpG island 15781
Tssr50741 5 36581792 to 36581809 17 - TSS region transcription start site region 50741
Tssr50742 5 36581815 to 36581845 30 - TSS region transcription start site region 50742
Tssr50743 5 36582381 to 36582399 18 - TSS region transcription start site region 50743
Gm42936 5 36584788 to 36613739 28951 - unclassified non-coding RNA gene predicted gene 42936
Tssr50744 5 36586219 to 36586229 10 - TSS region transcription start site region 50744
Tssr50745 5 36586239 to 36586248 9 - TSS region transcription start site region 50745
D5Ertd579e 5 36600485 to 36696024 95539 - protein coding gene DNA segment, Chr 5, ERATO Doi 579, expressed
Tssr50746 5 36611740 to 36611746 6 - TSS region transcription start site region 50746
Gm42507 5 36618701 to 36621255 2554 + unclassified gene predicted gene 42507
Tssr50747 5 36621267 to 36621279 12 - TSS region transcription start site region 50747
Gm32584 5 36630164 to 36661658 31494 - protein coding gene predicted gene, 32584