Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:35879449-36489567

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ablim2 5 35757880 to 35884973 127093 + protein coding gene actin-binding LIM protein 2
Cpgi15776 5 35893000 to 35894663 1663 CpG island CpG island 15776
Afap1 5 35893319 to 36003923 110604 + protein coding gene actin filament associated protein 1
Tssr45965 5 35893360 to 35893426 66 + TSS region transcription start site region 45965
Tssr45966 5 35893430 to 35893473 43 + TSS region transcription start site region 45966
Tssr45967 5 35913709 to 35913712 3 + TSS region transcription start site region 45967
H2af-ps 5 35917897 to 35918191 294 + pseudogene H2A histone family, pseudogene
D5Mit149 5 35919002 to 35919151 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 149
Tssr45968 5 35950881 to 35950895 14 + TSS region transcription start site region 45968
Tssr45969 5 35958879 to 35958885 6 + TSS region transcription start site region 45969
Tssr45970 5 36000354 to 36000359 5 + TSS region transcription start site region 45970
Tssr45971 5 36002046 to 36002090 44 + TSS region transcription start site region 45971
Tssr45972 5 36003402 to 36003412 10 + TSS region transcription start site region 45972
Sorcs2 5 36017180 to 36398139 380959 - protein coding gene sortilin-related VPS10 domain containing receptor 2
Tssr50719 5 36036958 to 36036974 16 - TSS region transcription start site region 50719
Tssr50720 5 36036974 to 36036994 20 - TSS region transcription start site region 50720
Tssr50721 5 36037029 to 36037041 12 - TSS region transcription start site region 50721
Tssr45973 5 36048655 to 36048660 5 + TSS region transcription start site region 45973
D5Ertd422e 5 36110746 to 36110979 233 DNA segment DNA segment, Chr 5, ERATO Doi 422, expressed
Tssr50722 5 36146790 to 36146794 4 - TSS region transcription start site region 50722
Tssr50723 5 36152928 to 36152958 30 - TSS region transcription start site region 50723
Tssr45974 5 36164040 to 36164044 4 + TSS region transcription start site region 45974
Gm32183 5 36164922 to 36165988 1066 + lncRNA gene predicted gene, 32183
Tssr50724 5 36165012 to 36165021 9 - TSS region transcription start site region 50724
Gm32119 5 36178563 to 36179281 718 - lncRNA gene predicted gene, 32119
Gm31945 5 36179449 to 36189567 10118 + lncRNA gene predicted gene, 31945
Tssr45975 5 36204016 to 36204027 11 + TSS region transcription start site region 45975
Psapl1 5 36204021 to 36206568 2547 + protein coding gene prosaposin-like 1
Tssr45976 5 36204036 to 36204043 7 + TSS region transcription start site region 45976
Tssr45977 5 36204047 to 36204063 16 + TSS region transcription start site region 45977
D5Jcs33 5 36230156 to 36230305 149 DNA segment DNA segment, Chr 5, John C. Schimenti 33
Tssr45978 5 36237717 to 36237727 10 + TSS region transcription start site region 45978
Tssr45979 5 36237741 to 36237782 41 + TSS region transcription start site region 45979
D5Jcs34 5 36259517 to 36259667 150 DNA segment DNA segment, Chr 5, John C. Schimenti 34
Tssr50725 5 36277756 to 36277769 13 - TSS region transcription start site region 50725
Mir7689 5 36301570 to 36301628 58 + miRNA gene microRNA 7689
D5Mit75 5 36304140 to 36304289 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 75
Tssr50726 5 36317547 to 36317550 3 - TSS region transcription start site region 50726
Tssr50727 5 36321635 to 36321648 13 - TSS region transcription start site region 50727
D5Jcs76 5 36328573 to 36328725 152 DNA segment DNA segment, Chr 5, John C. Schimenti 76
D5Jcs30 5 36340597 to 36340808 211 DNA segment DNA segment, Chr 5, John C. Schimenti 30
D5Jcs31 5 36355103 to 36355261 158 DNA segment DNA segment, Chr 5, John C. Schimenti 31
Tssr45980 5 36374658 to 36374698 40 + TSS region transcription start site region 45980
Tssr45981 5 36374874 to 36374883 9 + TSS region transcription start site region 45981
Tssr50728 5 36376938 to 36376981 43 - TSS region transcription start site region 50728
Cpgi15777 5 36397229 to 36398655 1426 CpG island CpG island 15777
Tssr50729 5 36397671 to 36397706 35 - TSS region transcription start site region 50729
Tssr50730 5 36398060 to 36398063 3 - TSS region transcription start site region 50730
Tssr50731 5 36398068 to 36398075 7 - TSS region transcription start site region 50731
Tssr50732 5 36398078 to 36398085 7 - TSS region transcription start site region 50732
Tssr50733 5 36398090 to 36398149 59 - TSS region transcription start site region 50733
D5Jcs32 5 36414526 to 36414680 154 DNA segment DNA segment, Chr 5, John C. Schimenti 32
2210406O10Rik 5 36447611 to 36464853 17242 - lincRNA gene RIKEN cDNA 2210406O10 gene
D5Mit288 5 36450901 to 36451015 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 288
D5Ertd521e 5 36463635 to 36463859 224 DNA segment DNA segment, Chr 5, ERATO Doi 521, expressed
Cpgi15778 5 36464413 to 36465646 1233 CpG island CpG island 15778
Tssr45982 5 36464792 to 36464797 5 + TSS region transcription start site region 45982
Tssr45983 5 36465158 to 36465196 38 + TSS region transcription start site region 45983
Grpel1 5 36465185 to 36474077 8892 + protein coding gene GrpE-like 1, mitochondrial
Tada2b 5 36473670 to 36484285 10615 - protein coding gene transcriptional adaptor 2B
Cpgi15779 5 36483299 to 36486204 2905 CpG island CpG island 15779
Tssr50734 5 36484234 to 36484302 68 - TSS region transcription start site region 50734
Tssr45984 5 36484578 to 36484620 42 + TSS region transcription start site region 45984
Ccdc96 5 36484588 to 36488171 3583 + protein coding gene coiled-coil domain containing 96
Tssr45985 5 36484623 to 36484634 11 + TSS region transcription start site region 45985