Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:35707880-35934973

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3tc1 5 35697180 to 35739987 42807 - protein coding gene SH3 domain and tetratricopeptide repeats 1
Gm31888 5 35719108 to 35722320 3212 + lncRNA gene predicted gene, 31888
Tssr50709 5 35722464 to 35722485 21 - TSS region transcription start site region 50709
Gm15650 5 35722555 to 35724485 1930 + antisense lncRNA gene predicted gene 15650
Tssr50710 5 35722607 to 35722615 8 - TSS region transcription start site region 50710
Tssr45957 5 35728408 to 35728412 4 + TSS region transcription start site region 45957
Tssr50711 5 35729007 to 35729016 9 - TSS region transcription start site region 50711
Tssr50712 5 35729022 to 35729039 17 - TSS region transcription start site region 50712
Tssr50713 5 35729048 to 35729078 30 - TSS region transcription start site region 50713
Tssr50714 5 35729088 to 35729095 7 - TSS region transcription start site region 50714
Tssr50715 5 35729260 to 35729286 26 - TSS region transcription start site region 50715
Tssr50716 5 35729290 to 35729312 22 - TSS region transcription start site region 50716
D5Jcs53 5 35737885 to 35738039 154 DNA segment DNA segment, Chr 5, John C. Schimenti 53
Tssr50717 5 35740025 to 35740056 31 - TSS region transcription start site region 50717
Cpgi15775 5 35756955 to 35758695 1740 CpG island CpG island 15775
D5Jcs39 5 35757329 to 35757478 149 DNA segment DNA segment, Chr 5, John C. Schimenti 39
Tssr45958 5 35757875 to 35757946 71 + TSS region transcription start site region 45958
Ablim2 5 35757880 to 35884973 127093 + protein coding gene actin-binding LIM protein 2
Tssr45959 5 35757951 to 35757966 15 + TSS region transcription start site region 45959
Tssr45960 5 35786151 to 35786178 27 + TSS region transcription start site region 45960
Tssr50718 5 35790621 to 35790641 20 - TSS region transcription start site region 50718
Tssr45961 5 35814356 to 35814371 15 + TSS region transcription start site region 45961
Tssr45962 5 35814375 to 35814400 25 + TSS region transcription start site region 45962
Tssr45963 5 35814424 to 35814453 29 + TSS region transcription start site region 45963
Tssr45964 5 35814455 to 35814482 27 + TSS region transcription start site region 45964
D5Mit76 5 35853866 to 35854015 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 76
Cpgi15776 5 35893000 to 35894663 1663 CpG island CpG island 15776
Afap1 5 35893319 to 36003923 110604 + protein coding gene actin filament associated protein 1
Tssr45965 5 35893360 to 35893426 66 + TSS region transcription start site region 45965
Tssr45966 5 35893430 to 35893473 43 + TSS region transcription start site region 45966
Tssr45967 5 35913709 to 35913712 3 + TSS region transcription start site region 45967
H2af-ps 5 35917897 to 35918191 294 + pseudogene H2A histone family, pseudogene
D5Mit149 5 35919002 to 35919151 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 149