Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:3546901-3960577

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam133b 5 3543833 to 3570238 26405 + protein coding gene family with sequence similarity 133, member B
Tssr45054 5 3554670 to 3554684 14 + TSS region transcription start site region 45054
Tssr45055 5 3557740 to 3557753 13 + TSS region transcription start site region 45055
n-R5s169 5 3561154 to 3561273 119 + rRNA gene nuclear encoded rRNA 5S 169
Tssr1413 5 3571560 to 3571564 4 + TSS region transcription start site region 1413
Tssr45056 5 3571572 to 3571580 8 + TSS region transcription start site region 45056
Tssr45057 5 3571590 to 3571610 20 + TSS region transcription start site region 45057
Tssr45058 5 3571664 to 3571671 7 + TSS region transcription start site region 45058
Tssr45059 5 3571676 to 3571692 16 + TSS region transcription start site region 45059
1700109H08Rik 5 3571716 to 3584341 12625 + protein coding gene RIKEN cDNA 1700109H08 gene
4833441D16Rik 5 3573053 to 3573546 493 unclassified gene RIKEN cDNA 4833441D16 gene
Tssr45060 5 3578207 to 3578223 16 + TSS region transcription start site region 45060
Rbm48 5 3583978 to 3596547 12569 - protein coding gene RNA binding motif protein 48
2510017J16Rik 5 3585112 to 3586374 1262 + antisense lncRNA gene RIKEN cDNA 2510017J16 gene
Cpgi15510 5 3595791 to 3596889 1098 CpG island CpG island 15510
Pex1 5 3596066 to 3637230 41164 + protein coding gene peroxisomal biogenesis factor 1
Tssr49988 5 3596071 to 3596118 47 - TSS region transcription start site region 49988
Tssr45061 5 3596204 to 3596256 52 + TSS region transcription start site region 45061
Tssr45062 5 3596306 to 3596393 87 + TSS region transcription start site region 45062
Tssr49989 5 3596540 to 3596579 39 - TSS region transcription start site region 49989
Gm43825 5 3624630 to 3625363 733 - antisense lncRNA gene predicted gene 43825
4833413G10Rik 5 3629777 to 3631722 1945 - antisense lncRNA gene RIKEN cDNA 4833413G10 gene
Gatad1 5 3639961 to 3647936 7975 - protein coding gene GATA zinc finger domain containing 1
Tssr49990 5 3640744 to 3640748 4 - TSS region transcription start site region 49990
Tssr49991 5 3641432 to 3641471 39 - TSS region transcription start site region 49991
Cpgi15511 5 3647155 to 3648107 952 CpG island CpG island 15511
Tssr49992 5 3647720 to 3647733 13 - TSS region transcription start site region 49992
Tssr49993 5 3647838 to 3648009 171 - TSS region transcription start site region 49993
Tssr49994 5 3648013 to 3648038 25 - TSS region transcription start site region 49994
Tssr49995 5 3648045 to 3648074 29 - TSS region transcription start site region 49995
Gm26238 5 3652544 to 3652660 116 + miRNA gene predicted gene, 26238
Tmbim7 5 3657004 to 3679865 22861 + protein coding gene transmembrane BAX inhibitor motif containing 7
Tssr49996 5 3657164 to 3657177 13 - TSS region transcription start site region 49996
Tssr45063 5 3657172 to 3657186 14 + TSS region transcription start site region 45063
Tssr45064 5 3657187 to 3657205 18 + TSS region transcription start site region 45064
Tssr45065 5 3657212 to 3657217 5 + TSS region transcription start site region 45065
Ankib1 5 3690000 to 3802925 112925 - protein coding gene ankyrin repeat and IBR domain containing 1
Gm22926 5 3695964 to 3696031 67 + miRNA gene predicted gene, 22926
Cpgi15512 5 3733057 to 3733266 209 CpG island CpG island 15512
D5Mit330 5 3744808 to 3744899 91 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 330
Gm43679 5 3751901 to 3755577 3676 - unclassified gene predicted gene 43679
Cpgi15513 5 3802145 to 3803802 1657 CpG island CpG island 15513
Tssr49997 5 3802858 to 3802875 17 - TSS region transcription start site region 49997
Tssr49998 5 3803062 to 3803079 17 - TSS region transcription start site region 49998
Tssr49999 5 3803081 to 3803119 38 - TSS region transcription start site region 49999
Tssr45066 5 3803160 to 3803193 33 + TSS region transcription start site region 45066
Krit1 5 3803165 to 3844515 41350 + protein coding gene KRIT1, ankyrin repeat containing
Tssr45067 5 3803195 to 3803206 11 + TSS region transcription start site region 45067
Tssr1414 5 3803209 to 3803220 11 + TSS region transcription start site region 1414
Tssr45068 5 3806058 to 3806062 4 + TSS region transcription start site region 45068
Cpgi15514 5 3844945 to 3845449 504 CpG island CpG island 15514
Tssr50000 5 3845017 to 3845050 33 - TSS region transcription start site region 50000
Tssr45069 5 3845171 to 3845192 21 + TSS region transcription start site region 45069
Lrrd1 5 3845173 to 3866596 21423 + protein coding gene leucine rich repeats and death domain containing 1
Tssr45070 5 3845195 to 3845202 7 + TSS region transcription start site region 45070
Rps4x-ps 5 3875362 to 3876154 792 + pseudogene Rps4x retrotransposed pseudogene
Mterf1a 5 3890581 to 3893933 3352 - protein coding gene mitochondrial transcription termination factor 1a
Tssr45071 5 3909290 to 3909299 9 + TSS region transcription start site region 45071
Tssr45072 5 3909310 to 3909321 11 + TSS region transcription start site region 45072
Tssr1415 5 3927533 to 3927544 11 + TSS region transcription start site region 1415
Tssr45073 5 3927821 to 3927843 22 + TSS region transcription start site region 45073
Akap9 5 3927827 to 4080204 152377 + protein coding gene A kinase (PRKA) anchor protein (yotiao) 9
Tssr45074 5 3927857 to 3927888 31 + TSS region transcription start site region 45074
Cpgi15515 5 3927864 to 3928991 1127 CpG island CpG island 15515
Tssr45075 5 3928033 to 3928103 70 + TSS region transcription start site region 45075
Tssr45076 5 3928267 to 3928300 33 + TSS region transcription start site region 45076
Tssr45077 5 3936518 to 3936522 4 + TSS region transcription start site region 45077
Tssr45078 5 3957736 to 3957754 18 + TSS region transcription start site region 45078